Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3872 ATGGCTAATTCAGCTGAACCGTCGTCATCTTTGAGTTTTACATCATCTTCACACTTATCAAATGGATCAATTAGTCATAACTCGAATGGCAACGATTATGCTCGTAACCTGGAGGTTATCAGTTTGAGTAAGCTTAGTTCTAATTTGGAACAGCTTTTGATTGATTCTGATTATGATTATGGTGATGCGGACATCATTGTTGAGGGAGTTTCGGTTAGAGTTCATCGGTGTATTTTAGGTTCTAGGAGTAAGTTTTTCCATGAGCTATTTAAGAGAGGTAAAGAGAAAGGATCATTGAAGAATGAAGGAAAATTGAAGTATTGCTTGAGTGATTTGTTGCCTTATGGCAAAGTTGGACATGAAGCTTTTCTCATATTACTTAGTTATGTGTATACTGGTAAACTCAAACCCTCTCCAATGGAAGTTTCTACATGTGTTGATAATGTGTGTGCTCATGATGCTTGTGGACCTGCAATTAGTTTTGCTGTGGAGTTGATGTATGCCTCTTCCATTTTTCAAATGCCAGAGTTGGTTTCACTTTTTCAGCGACGTCTTCTTAACTTTGTAGGGAAGGCTCTTGTGGAAGACGTCATTTCAATCCTTATGGTTGCTTTCCATTGTCAATTGAATCAACTCGTCGCTCAATGTGTTGACAGGGTGGCACGATCAGATCTTGACCAAATCTCAATCGAGAAAGCACTTCCTCACGAGCTCTCCGAAAATGTTAAATTGTTCCGCCATGATCTTCAGAAGGATGGTGAAGACGATGCTCCCGTAATGGACGCTCTGTCTCTAAAACGAATCACTAGAATACACAAGGCATTGGACTCGGACGACGTCGAACTTGTTAAACTTCTTTTGAATGAGTCAGACATTTCTTTAGATGAAGCCGGTGCTCTCCATTATGCAGCAGCCTACTGTGACCCTAAGGTTGTCCCTGAAGTACTTGGATTAGGTCTAGCTAATGTCAATCTTCGGAATTCTCGAGGGTACACGGTGCTTCACGTTGCTGCCATGCGTAAGGAACCTTCCATTATAGTATCACTTCTTACTAAAGGAGCTTGCGCGTCGGATTTGACTTTCGATGGTCAGAGCGCTGTTAGTATTTGTAGGAGGTTAACAAGACCGAAGGATTATCACACAAAAACAGAACAAGGGAAAGAAACAAACAAAGACCGGATATGCATCGATGTTCTTGAAAGAGAAATGCGAAGGAATCCTTTGGCTGGAGATCCCTCGGTATCTTCACAAACAGTGGCTGATGATCTCCACATGAAACTTCTGTACCTTGAGAACCGAGTGGCATTTGCAAGACTGTTCTTCCCTTTGGAAGCCAAGCTAGCCATGGACATTGCTCGCGCGGAGACAACATCCGAGTTTGCCGGTCTTTCGGCGTCAAAAGGTTCAAATGGAAACTTAAGGGAGGTTGACCTCAATGAGACTCCCATAATGCAAAACAAAAGACTTATTTCTAGAATGGAAGCTCTAATGAAAACAGTCGAAATGGGGCGACGCTACTTTCCTCATTGCTCGGAAGTGCTGGATAAGTTCATGGAGGACGACCTACCTGATCTGTTTTACCTTGAGAAGGGTACCGAAGAAGAGCAAAGAATCAAGAGGACGCGATTCGTGGAGCTCAAGGATGATGTGAACAATGCTTTCAACAAGGACAAGGCTGAAATTAGTCGCTCTGGGATTTCATCTTCATCATCCTCATCATCTCTTAGAGATTCTGTATATTACAAGGCTAGAAAAATATGA 1761 0.4225 MANSAEPSSSLSFTSSSHLSNGSISHNSNGNDYARNLEVISLSKLSSNLEQLLIDSDYDYGDADIIVEGVSVRVHRCILGSRSKFFHELFKRGKEKGSLKNEGKLKYCLSDLLPYGKVGHEAFLILLSYVYTGKLKPSPMEVSTCVDNVCAHDACGPAISFAVELMYASSIFQMPELVSLFQRRLLNFVGKALVEDVISILMVAFHCQLNQLVAQCVDRVARSDLDQISIEKALPHELSENVKLFRHDLQKDGEDDAPVMDALSLKRITRIHKALDSDDVELVKLLLNESDISLDEAGALHYAAAYCDPKVVPEVLGLGLANVNLRNSRGYTVLHVAAMRKEPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYHTKTEQGKETNKDRICIDVLEREMRRNPLAGDPSVSSQTVADDLHMKLLYLENRVAFARLFFPLEAKLAMDIARAETTSEFAGLSASKGSNGNLREVDLNETPIMQNKRLISRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTEEEQRIKRTRFVELKDDVNNAFNKDKAEISRSGISSSSSSSSLRDSVYYKARKI* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3872 586 SUPERFAMILY POZ domain 50 187 IPR011333 -
Psa1g3872 586 Pfam NPR1/NIM1 like defence protein C terminal 371 573 IPR021094 -
Psa1g3872 586 SMART BTB_4 61 189 IPR000210 GO:0005515
Psa1g3872 586 CDD BTB_POZ_NPR_plant 44 189 - -
Psa1g3872 586 SMART ANK_2a 329 361 IPR002110 GO:0005515
Psa1g3872 586 SMART ANK_2a 266 294 IPR002110 GO:0005515
Psa1g3872 586 SMART ANK_2a 295 325 IPR002110 GO:0005515
Psa1g3872 586 Gene3D Potassium Channel Kv1.1; Chain A 27 221 IPR011333 -
Psa1g3872 586 ProSiteProfiles Ankyrin repeat profile. 329 354 IPR002110 GO:0005515
Psa1g3872 586 SUPERFAMILY Ankyrin repeat 263 372 IPR036770 -
Psa1g3872 586 Pfam Domain of unknown function (DUF3420) 224 272 IPR024228 -
Psa1g3872 586 Pfam BTB/POZ domain 59 179 IPR000210 GO:0005515
Psa1g3872 586 Gene3D - 263 403 IPR036770 -
Psa1g3872 586 ProSiteProfiles Ankyrin repeat region circular profile. 329 354 - -
Psa1g3872 586 PANTHER REGULATORY PROTEIN NPR3 10 574 - -
Psa1g3872 586 PANTHER REGULATORY PROTEIN NPR3 10 574 IPR044292 GO:0009862|GO:2000022|GO:2000031
Psa1g3872 586 Pfam Ankyrin repeat 330 355 IPR002110 GO:0005515
Psa1g3872 586 ProSiteProfiles BTB domain profile. 61 139 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3872 Psa-Chr1 320647120 320651168 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Psa1g3872 NPR1_like_C 6.7e-96 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3872 K14508 - gmx:100217338 937.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3872 1 320647120 320651168 Psa1g3872 1 320647120 320651168 ECH