Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3864 ATGGTTCTTCAAAACGATATTGATCTGTTGAATCCACCGGCTGAACTCGAGAAGAGAAAGCATAAACTTAAACGACTTGTTCAATCGCCTAACTCATTCTTCATGGATGTCAAATGTCAAGGTTGCTTCAATATAACAACTGTATTCAGTCACTCCCAAACTGTTGTTGTATGTGGTAATTGTCAGACAGTGTTGTGCCAACCAACCGGTGGCAAGGCAAGACTAACAGAGGGATGCTCATTCAGAAAGAAGGGAGATTAG 261 0.4138 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3864 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Psa1g3864 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Psa1g3864 86 Gene3D - 5 85 IPR023407 -
Psa1g3864 86 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 2 85 - -
Psa1g3864 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
Psa1g3864 86 PANTHER 40S RIBOSOMAL PROTEIN S27 2 85 IPR000592 GO:0003735|GO:0005840|GO:0006412
Psa1g3864 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3864 Psa-Chr1 320428343 320430519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3864 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 96.512 3.23e-60 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3864 K02978 - thj:104799991 176.022