Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3859 ATGCAGTCTCAACTTTCTAATGATGTTACGACAAATAATGAGATTGAAGACATAAATCTCATTACATTACCACCAGGTTACAGATTCAACCCTAATGATATTGAGCTGATTGATTATTATTTGAAACAAAAATTACAAAGTGTTCACATAGTTCCACCAAGGATTCATGACGTTGATGTTTACAAATTTTCTGCTCAACAATTAGAAAATAATTATAAATTCAAAGGAGAGGACACAATATATTTTTTTACGCCAAGAAGTAAGAAGTATGAAAATGGGCAACGTCCTGATCGAGCAGTTGAAAATCATGGTTTTTGGAAAGCTACTGGAAAAGAAAATTCAGTGATGAATAATGATGTTGAAATTGGATTCAAAAGAAGTTTAGTGTTTTACACAGGTAAACAAGGAAAGACTAAAGAGTTAGTGAATTTGAAGACCAATTGGATTATGCAAGAGTTCATAATCAAAGATTTTACAATTTCTGGTGCAACTCTTTATAGTAATAAGGATGATTGGGTTTTATGCAAAATTTATGAGCATAAGTATGGAATGAAATGTCAAATTAAAAGTCAAAACAACAAAAAGGTGACAACATCTACCAATGTGGTTGTTCCTCCACCATGCAAACCCATTCAGCATTCAATGACTCAACAAATGCAAGATTCTATGTTAGAACACATGATGATTCAATCTCAACTTAATCAACATTCTCAATTTCAACCAATAGAAGTTCCCTTATCAGCAAATATGATTGGTATCTCACACTATCAATTAAATCAACATTCTCAAGATCAAGCAATGCAAGATTATTTGTCTGTAAACAATTCACAATATCAATTTGTTCAACATTCTCATGCTCAACAAATGCAAGATTTTCGATTACCGAACATGATGTTTCAAAACCAAGCCAATAAACATTTTAGGACACAACAAATACAAGATTTATTGTCACGATATCAATATTTTAATGCTCAACAAAGACAATATTCTTTGTCGACAGATGCAACTTCCATGCCACAAGATCAACATTTTGAAACCGCAATGGAAGAAGATTATAGTGATCCATGGAAGTTTATAAACTTCGATAATATTGAAAAAGTTTGA 1104 0.3161 MQSQLSNDVTTNNEIEDINLITLPPGYRFNPNDIELIDYYLKQKLQSVHIVPPRIHDVDVYKFSAQQLENNYKFKGEDTIYFFTPRSKKYENGQRPDRAVENHGFWKATGKENSVMNNDVEIGFKRSLVFYTGKQGKTKELVNLKTNWIMQEFIIKDFTISGATLYSNKDDWVLCKIYEHKYGMKCQIKSQNNKKVTTSTNVVVPPPCKPIQHSMTQQMQDSMLEHMMIQSQLNQHSQFQPIEVPLSANMIGISHYQLNQHSQDQAMQDYLSVNNSQYQFVQHSHAQQMQDFRLPNMMFQNQANKHFRTQQIQDLLSRYQYFNAQQRQYSLSTDATSMPQDQHFETAMEEDYSDPWKFINFDNIEKV* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3859 367 PANTHER NAC TRANSCRIPTION FACTOR 56 17 331 - -
Psa1g3859 367 Gene3D NAC domain 32 184 IPR036093 GO:0003677|GO:0006355
Psa1g3859 367 ProSiteProfiles NAC domain profile. 23 180 IPR003441 GO:0003677|GO:0006355
Psa1g3859 367 SUPERFAMILY NAC domain 18 178 IPR036093 GO:0003677|GO:0006355
Psa1g3859 367 Pfam No apical meristem (NAM) protein 24 153 IPR003441 GO:0003677|GO:0006355
Psa1g3859 367 PANTHER NAC DOMAIN-CONTAINING PROTEIN 102-LIKE 17 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3859 Psa-Chr1 319942921 319944895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3859 21 198 NAC Transcription Factor Family AT5G08790 39.779 8.13e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa1g3859 NAM 2.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3859 - - cam:101498998 263.077