Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3853 ATGAACTCCCTTCGTCTCATAGCCACAGCTCTCTGCTGTGTTGCAATTGTTTCTGGAGGATTAGCTTCCTCCCCAGATGCACAACTTGACCCTAACTTTTACAGTCAAACTTGCCCCAAGTTGCAGTCTATAGTATCTAAAATCTTATCCAAAGTTGCTAAGAAAGATCTCCGAATGCCAGCCAGTCTCATCAGGCTCCACTTTCATGATTGCTTTGTTCAAACCGGAGGTCCAGGTTGGTTGGTTCCATTAGGAAGAAGAGATAGTTTAACCGCAAATCAGACTCTTGCTAATAAAAATCTTCCAGGTCCATCTTTCAGTTTAACTGCACTGAAATCTGCTTTTGCTGATCAAGGCCTCACCACACTTGATCTAGTTTCACTCTCAGGTGCTCATACATTTGGAAGATCACGTTGCTTTTTATTCAGTGATCGATTATACAACTTCAGCAATACTGGAAAGCCTGATCCAACTCTTGATCCAGCTTACTTGAAAGTATTACAAAAACAGTGTCCTCAGAACGGCCCCGGAGATAACCGTGTGAATTTCGATCCAACGACTCCGGATATATTGGACAAGAACTACTACAACAATCTTCAAGGTAAAAAGGGTTTGCTTCAGAGTGATCAAGAATTGTTCTCAACACCAGGTGCAGATACTATTGGCATTGTCAACAATTTTGCCGGTAACCAAATTGCTTTCTTTCAGAATTTTGCGGCTTCGATGATTAAAATGGGAAATATTGGTGTGCTTACGGGAAAGAAAGGTGAAATTAGAAAACAATGTAATTTTGTTAATCAGAAGAAGAAATCATCTGAGTTGGATATTACAACTGTGACTTCTACAGAATCATTTGAGGGGGGTATGGTTAGTTCAATGTAA 882 0.4036 MNSLRLIATALCCVAIVSGGLASSPDAQLDPNFYSQTCPKLQSIVSKILSKVAKKDLRMPASLIRLHFHDCFVQTGGPGWLVPLGRRDSLTANQTLANKNLPGPSFSLTALKSAFADQGLTTLDLVSLSGAHTFGRSRCFLFSDRLYNFSNTGKPDPTLDPAYLKVLQKQCPQNGPGDNRVNFDPTTPDILDKNYYNNLQGKKGLLQSDQELFSTPGADTIGIVNNFAGNQIAFFQNFAASMIKMGNIGVLTGKKGEIRKQCNFVNQKKKSSELDITTVTSTESFEGGMVSSM* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3853 293 Gene3D - 75 266 - -
Psa1g3853 293 Gene3D Peroxidase, domain 2 102 245 - -
Psa1g3853 293 ProSiteProfiles Plant heme peroxidase family profile. 61 266 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g3853 293 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g3853 293 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g3853 293 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g3853 293 Gene3D - 28 74 - -
Psa1g3853 293 Pfam Peroxidase 74 229 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g3853 293 PANTHER PEROXIDASE FAMILY PROTEIN 73 276 - -
Psa1g3853 293 PANTHER PEROXIDASE FAMILY PROTEIN 7 74 - -
Psa1g3853 293 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g3853 293 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g3853 293 PRINTS Plant peroxidase signature 210 222 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g3853 293 ProSitePatterns Peroxidases proximal heme-ligand signature. 124 134 IPR019793 -
Psa1g3853 293 SUPERFAMILY Heme-dependent peroxidases 28 266 IPR010255 GO:0004601|GO:0006979|GO:0020037
Psa1g3853 293 PANTHER PEROXIDASE 72-RELATED 73 276 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g3853 293 PANTHER PEROXIDASE 72-RELATED 7 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g3853 293 CDD secretory_peroxidase 28 265 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3853 Psa-Chr1 319408904 319410478 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3853 22 74 Peroxidase AT2G38380 50.943 4.46e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3853 K00430 - gmx:100804765 312.383