Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3847 ATGAACTCCTTTGGTCTCACATTGACAGCTCTATGCTGTGTAGTGCTTGTGCTTGGAGGCTTACCCTTCTCTTCTGATGCACAGCTTGATGCATCTTTTTACAGAAACACTTGTCCAGATGTTCATTCCATTGTTCGTGAAGTCATAAGAAATGTTTCCAAGACAGATCCAAGAATGCTTGCTAGTCTCGTCAGACTTCACTTTCATGACTGTTTTGTTCAAGCACAAGGTCCTAATTGGAAAGTTCCATTAGGAAGAAGAGATGGTTTAACAGCAAATCAATCACTTGCTAACACAAATCTTCCAGCTCCTTTCAACACATTAGATGAACTCAAAGCTGCTTTTGCTAAACAAGGCCTCACCCCTACTGATCTAGTTGCTCTTTCCGGTGCTCACACATTCGGAAGATCTCACTGTTCCTTATTCGTCGATAGGTTATACAATTTCAGCAATACCGGAAAGCCTGATCCATCTCTCAACACAACTTACTTACAAGAGTTACGCAAAACATGCCCTAAGGGTGGAAGTGGAACAAACCTAGCCAATTTTGACCCTACTACTCCGGATAGATTTGACAAGAACTACTACTCTAATCTTCAGGTTAAAAAGGGTTTGCTTCAGAGTGATCAAGAGCTTTTCTCAACATCTGGTGCTGATACTATTACCATTGTGAACAAGTTTAGCGCTGACAAAAATGCTTTCTTTGATAGCTTTGAGACTGCAATGATTAAAATGGGAAATATTGGTGTGCTTACTGGGAACAAAGGAGAGATTAGAAAACATTGTAATTTTGTTAACAAGGATCGTATCAGAATGGCTTCTAGGGATTCATCAGAATCTGCTATGGTTAGTTCAATTTAA 861 0.3984 MNSFGLTLTALCCVVLVLGGLPFSSDAQLDASFYRNTCPDVHSIVREVIRNVSKTDPRMLASLVRLHFHDCFVQAQGPNWKVPLGRRDGLTANQSLANTNLPAPFNTLDELKAAFAKQGLTPTDLVALSGAHTFGRSHCSLFVDRLYNFSNTGKPDPSLNTTYLQELRKTCPKGGSGTNLANFDPTTPDRFDKNYYSNLQVKKGLLQSDQELFSTSGADTITIVNKFSADKNAFFDSFETAMIKMGNIGVLTGNKGEIRKHCNFVNKDRIRMASRDSSESAMVSSI* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3847 286 PANTHER PEROXIDASE 72-RELATED 73 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g3847 286 PANTHER PEROXIDASE 72-RELATED 7 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g3847 286 SUPERFAMILY Heme-dependent peroxidases 28 266 IPR010255 GO:0004601|GO:0006979|GO:0020037
Psa1g3847 286 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g3847 286 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g3847 286 PRINTS Plant peroxidase signature 210 222 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g3847 286 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g3847 286 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g3847 286 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g3847 286 ProSiteProfiles Plant heme peroxidase family profile. 28 266 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g3847 286 PANTHER PEROXIDASE FAMILY PROTEIN 7 74 - -
Psa1g3847 286 PANTHER PEROXIDASE FAMILY PROTEIN 73 275 - -
Psa1g3847 286 Gene3D Peroxidase, domain 2 102 245 - -
Psa1g3847 286 Pfam Peroxidase 74 229 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g3847 286 ProSitePatterns Peroxidases proximal heme-ligand signature. 124 134 IPR019793 -
Psa1g3847 286 Gene3D - 29 75 - -
Psa1g3847 286 Gene3D - 76 266 - -
Psa1g3847 286 CDD secretory_peroxidase 28 265 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3847 Psa-Chr1 319165981 319167316 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3847 43 286 Peroxidase AT2G38390 53.061 6.20e-80 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3847 K00430 - aprc:113852209 328.176