Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3843 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGTCTCGACGCTCCTCCCTCCGCCGCCACCGCATCTGCCACCGTTTCCGCTGCACCTTCCGGTCCTATTGTCCAGTCCGATTCCTACTTGCCACCTTCCGCGGCTTCCAATGGTGCCCCCGCTCCTTCGATTGCTGAGCCCGTTCCCGGTAACAATCCTGGACGAAGGAGCTTCCGGCAAACGGTTTGCCGGCACTGGCTACGTAGTCTGTGTATGAAAGGCGAAGCCTGCGGGTTTTTGCACCAGTATGATAAGGCTCGGATGCCGGTGTGCCGGTTTTTTAGATTGTATGGAGAGTGTCGTGAGCAGGATTGTGTTTACAAGCACACTAATGAAGATATCAAGGAGTGTAACATGTACAAGCTAGGATTTTGTCCTAACGGACCTGATTGTCGTTACAGGCATGCGAAATCTCCTGGACCTCCACCTCCAATTGAAGAGGTCCTTCAGAAGATCCAACATTTGTATTCTTACAATTATAACAATTCTCATAAATTTGTCCAACAAAGGGGTTCTAGCTATACTCAACAAGTTGAAAAGTCTCAGTTTCCTCAAGCAATCAATTCTGCAAACCAAGGTGTGGCTGGAAAACCATTAGCTGCAGAGTCAGGAAATGTCCAGCAGCAGCAACAAGTTCAACAACCTCAGCAGCAAGTCAGCCAGAACCAAGTGCAAAATCTTGCTAATGGCCAGACCAATCAAGCCAATCGAACATCAACTCCTTTACCTCAGGGAATATCTAGGTATTTTATTGTTAAGAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCAAAACTAAATGAAGCATTTGACTCTGTAGAAAATGTGATATTGGTTTTCTCAGTCAACCGTACTCGACATTTCCAGGGTTGTGCAAAGATGACTTCCAGAATTGGTGGTTCTGTTCCTGGGGGGAACTGGAAATATGCTCATGGAACGGCACATTATGGGCGGAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGCCATTTGAGAAATCCATACAATGAAAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAACCCTCTATTGGTGAGCAGTTGGCATCCTTGCTTTATGTTGAACCAGATAGCGAACTTATGGCTATCTCGATTGCAGCTGAGTCTAAACGAGAAGAGGAGAAGGCAAAGGGGGTGAATCCAGATAATGAAGGAGAAAATCCAGATATTGTCCCATTCGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGAGGAGAGCTTTGGTAATGGTGTAGGGCCAGTTGTTCAAGGCAGAGGTAGGGGCAGAGGTATGATGTGGCCCCCTCACATGCATCTCGGACGCGGAGCCAGACCCATGCCTGGAATGCAAGGTTTTAATCCGGTAATGATGGGTGATGGATTACCCTACGGGCCTCCTGGACCTGATGGTTTTGGTATGCCGGATCTCTTTGGCATGGGTCCCCGGGGTTTTGGTCCATACGGTCCTAGATTCTCCGGTGATTTTGGAGGCCCCCCAGCTGCCATGATGTTCCGAGGGCGACCCTCACAACCTGGAATGTTTCCTGGTGGTGGGTTTGGGATGATGATGAATCATGGACGCGGTCCCTTTATGGGGGGAATGGGGGTTCCAGGTCCCAACCCAGCAAGAGGTGGTAGGCCAGTGAATATGCCTCCGATGTTTCCACCACCTCCGCCTCCACCACAAAATATGAACCGCATTGCCAAGAGAGATCAAAGAACAAGTGATCGAAATGATAGGTACAGTTCAGGACCAGAGCAAGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGGGGTCCTGATGATGACATGCAGTATCAACAAGGATACAAGTCACAACAGGATGACAAGAATGACGATAGTGAAAGCGAAGACGAGGCACCTAGGCGGTCAAGACATGGAGAGGGTAAAAAAAGAAAAGGGGAAGCTTAG 2055 0.4798 MEDSEGVLSFDFEGGLDAPPSAATASATVSAAPSGPIVQSDSYLPPSAASNGAPAPSIAEPVPGNNPGRRSFRQTVCRHWLRSLCMKGEACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPIEEVLQKIQHLYSYNYNNSHKFVQQRGSSYTQQVEKSQFPQAINSANQGVAGKPLAAESGNVQQQQQVQQPQQQVSQNQVQNLANGQTNQANRTSTPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILVFSVNRTRHFQGCAKMTSRIGGSVPGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYVEPDSELMAISIAAESKREEEKAKGVNPDNEGENPDIVPFEDNEEEEEEESDEEEESFGNGVGPVVQGRGRGRGMMWPPHMHLGRGARPMPGMQGFNPVMMGDGLPYGPPGPDGFGMPDLFGMGPRGFGPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNHGRGPFMGGMGVPGPNPARGGRPVNMPPMFPPPPPPPQNMNRIAKRDQRTSDRNDRYSSGPEQGKSQDMLSQSGGPDDDMQYQQGYKSQQDDKNDDSESEDEAPRRSRHGEGKKRKGEA* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3843 684 MobiDBLite consensus disorder prediction 654 684 - -
Psa1g3843 684 MobiDBLite consensus disorder prediction 216 236 - -
Psa1g3843 684 MobiDBLite consensus disorder prediction 432 454 - -
Psa1g3843 684 ProSiteProfiles Zinc finger C3H1-type profile. 125 152 IPR000571 GO:0046872
Psa1g3843 684 ProSiteProfiles YTH domain profile. 261 396 IPR007275 GO:0003723
Psa1g3843 684 MobiDBLite consensus disorder prediction 598 684 - -
Psa1g3843 684 ProSiteProfiles Zinc finger C3H1-type profile. 71 98 IPR000571 GO:0046872
Psa1g3843 684 Gene3D ph1033 like domains 238 399 - -
Psa1g3843 684 MobiDBLite consensus disorder prediction 215 236 - -
Psa1g3843 684 MobiDBLite consensus disorder prediction 625 653 - -
Psa1g3843 684 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 681 IPR045168 -
Psa1g3843 684 Gene3D - 65 128 - -
Psa1g3843 684 MobiDBLite consensus disorder prediction 610 624 - -
Psa1g3843 684 Pfam YT521-B-like domain 261 395 IPR007275 GO:0003723
Psa1g3843 684 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 681 - -
Psa1g3843 684 SMART c3hfinal6 71 97 IPR000571 GO:0046872
Psa1g3843 684 SMART c3hfinal6 99 125 IPR000571 GO:0046872
Psa1g3843 684 SMART c3hfinal6 127 151 IPR000571 GO:0046872
Psa1g3843 684 MobiDBLite consensus disorder prediction 413 462 - -
Psa1g3843 684 SUPERFAMILY CCCH zinc finger 73 96 IPR036855 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa1g3843 YTH 1.1e-18 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3843 K14404 - gmx:100802826 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3843 1 318945854 318960149 Psa1g3843 1 318945854 318960149 ECH