Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3840 ATGTTTCCAAGACTGATCCTCGAATGCTCGCCAGCCTCGTCAGGCTTCACTTTCATGACTGCTTTGTTCAATTGGACAGTTCCTTTAGGAAGAAGAGATGGCTTAACTGCAAACCGAACGCTTGCGAATCAAAATCTTCCAGCTCCTTTCGACGCATTGGATAAACTCAAAGCTGCATTTAAAGCTCAAGGACTCGATACTACTGATCTAGTTGCTCTCTCTGGTGCTCATACATTTGGAAAAGCTCATTGCTCTTTCTTCGTTGGCCGATTATACAACTTCAGCAATACTGGAAAACCCGATCCATCTCTCAACACAACCTACTTGACACAATTGCGCACGATATGTCCCAATGGTGGACCTGGCACCAACCTTACCAATTTTGATCCAACGACTCCTGATAAATTCGACAAAAACTATTACTCGAATCTTCAGGTGAAAAATGGCTTACTCCAAAGTGATCAAGAACTGTTCTCAACATCTGGTGCAGATACCATTAGCATTGTCAACAAATTCAGCGCAAATCAAAGCGCTTTCTTTGAGAGCTTTAAGGCTGCAATAATCAAAATGGGCAATATTGGTGTGTTAACTGGCAGCCAAGGAGAGATTAGAAAGCAATGCAACTTTGTTAATTCAAAATCAGCAGAGCTAGATATAGACACTATCGAGTCTATTGATTCATCAGAGGAGGATGATCCCGACCCTTCATATAACCCCCCTCGAACTTTGCCCTCAACTCATTTTCGACCTGGTCTTGCTTGTCCCAATCGCCACGCTCTAGCATCAGCCCTCTTAACAGGTAATTCTCCTTCATGTCAGATAGCTTGGGGGACAGGCTGGTGTTCAGAGGCCTATAGTCGCCAAGAAACTCTTCGGAGAGGAGGAGGTGGGAGCCGGTAA 900 0.4444 MFPRLILECSPASSGFTFMTALFNWTVPLGRRDGLTANRTLANQNLPAPFDALDKLKAAFKAQGLDTTDLVALSGAHTFGKAHCSFFVGRLYNFSNTGKPDPSLNTTYLTQLRTICPNGGPGTNLTNFDPTTPDKFDKNYYSNLQVKNGLLQSDQELFSTSGADTISIVNKFSANQSAFFESFKAAIIKMGNIGVLTGSQGEIRKQCNFVNSKSAELDIDTIESIDSSEEDDPDPSYNPPRTLPSTHFRPGLACPNRHALASALLTGNSPSCQIAWGTGWCSEAYSRQETLRRGGGGSR* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3840 299 Pfam Peroxidase 21 174 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g3840 299 PRINTS Plant peroxidase signature 21 36 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g3840 299 PRINTS Plant peroxidase signature 68 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g3840 299 PRINTS Plant peroxidase signature 127 142 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g3840 299 PRINTS Plant peroxidase signature 143 160 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g3840 299 PRINTS Plant peroxidase signature 185 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g3840 299 SUPERFAMILY Heme-dependent peroxidases 21 211 IPR010255 GO:0004601|GO:0006979|GO:0020037
Psa1g3840 299 PRINTS Haem peroxidase superfamily signature 21 33 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g3840 299 PRINTS Haem peroxidase superfamily signature 69 84 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g3840 299 PRINTS Haem peroxidase superfamily signature 129 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g3840 299 Gene3D Peroxidase, domain 2 47 190 - -
Psa1g3840 299 CDD secretory_peroxidase 25 210 IPR033905 GO:0004601|GO:0042744
Psa1g3840 299 Gene3D - 18 211 - -
Psa1g3840 299 PANTHER PEROXIDASE 72-RELATED 24 222 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g3840 299 ProSitePatterns Peroxidases proximal heme-ligand signature. 69 79 IPR019793 -
Psa1g3840 299 ProSiteProfiles Plant heme peroxidase family profile. 25 211 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g3840 299 PANTHER PEROXIDASE FAMILY PROTEIN 24 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3840 Psa-Chr1 318803066 318804801 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3840 25 223 Peroxidase AT5G06730 56.281 7.86e-78 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3840 K00430 - gmx:112997600 318.546