Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3825 ATGATGGCACTTTCTATGCATAAAGACGCTAATAACCAAATGGATGCTGGTAAGTATGTGAGGTACACTCCTGAACAAGTTGAAGCTTTGGAGAGAGTTTACACAGAATGTCCAAAGCCTAGCTCTTTGAGAAGACAGCAGCTCATTAGGGAGTGTCCTATTCTTTCCAACATTGAACCTAAACAGATCAAAGTTTGGTTTCAGAATAGAAGGTGTCGGGAGAAGCAAAGAAAGGAAGCTTCTCGTTTGCAGACAGTGAATAGAAAACTGTCTGCTATGAACAAATTGTTAATGGAAGAGAATGACCGTCTGCAGAAGCAAGTTTCTCACCTGGTTTATGAGAATGGATACATGAAGCAACAGATTCACACTGTGAGTGCTTCTGCTGCAACTACCACAGACAATAGCTGTGATTCTGTGGTAATGAGTGGTCAAAACCAACAGCAAAACCCACATCAGCGTCCTCAAAGGGATGCCAACAACCCAGCTGGTCTCCTTGCCGTGGCTCAGGAGACCCTGGCAGAGTTCCTTTCTAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGTATTGTTGCTGTTTCCCGCAATTGTAGTGGGATAGCGGCACGTGCCTGCGGCCTTGTGAGTCTAGAACCCACTAAGGTTGCCGAGATTCTTAAAGATCGACTGTCATGGTATCGTGACTGCCGATGTGTTGATGTTTTGAATATTGTCCCCACCGGAGGTGGTGGTACAATAGAGCTTTTGTATATGCAGACATATGCGCCAACAACATTGGCTGCAGCTCGAGACTTTTGGACTCTAAGATACACTACTAGTTTGGAAGATGGAAGTCTTGTGATATGTGAGAGGTCGTTGAATGTTTCGACTGGTGGTCCTACAGGGCCTGCTTCGACAAATTTTGTGAGGGCTGAAATGCTTCCAAGTGGTTTTCTAATTAGACCATGCGAGGGTGGTGGATCTATTATTCATATTGTTGATCATGTTGACTTAGATGTTTGGAGTGTTCCTGAAGTACTAAGGCCCCTCTATGAATCTTCAAAAATTTTGGCTCAAAAACTGACTATTGCAGCTTTGCAACATGTAAGACAAATAGCACAGGAGTCCAGTGGTGAAATTCAGTATGGTGGCGGGCGCCAGCCTGCTGTTTTGAGAACATTTAGTCAGAGACTTTGCAGAGGGTTTAATGATGCTGTGAATGGATTTGTCGATGACGGTTGGTCTTTGCTGGGAAATGATGGCGTTGAAGATGTGACAATTTCTGTGAACTCTTCTCCAAATAAGTTTTTGGGGTCTAATTACAATTCATCAATGTTCCCTGCATTTGGGGGTGGTGTCTTGTGTGCCAAGGCATCAATGCTGCTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGTTTTTTGCGGGAACATAGATCGGAATGGGCTGATTATGGTGTTGATGCGTACTCTGCTGCTTGTCTCAAGTCTAGCCCCTATGCTGTTCCATGTGCAAGACCTGGTGGCTTCCCCAGCAGCCAGGTCATTTTACCTCTTGCTCCTACAGTTGAGCACGAAGAGTTCCTTGAAGTAGTTCGTATAGAGGGTCATGCATTTACACCAGAAGATGTTGCATTGGCCCGTGATATGTATCTGTTACAGCTGTGTAGTGGAATTGATGAAAATTCAATTGGAGCATGTGCTCAACTTGTGTTTGCACCAATAGACGAATCCTTTGCCGATGATGCACTTTTGCTTCCTTCCGGTTTTCGCGTTATTCCCTTGGATCCTAAATCAGATGTTCCGGCTACGTCAAGGACTTTGGATTTGGCATCAACACTTGAAGTGGGATCTAGTAATGCCCGAGCAGCTGGTGAAGGTGGTGATGCATACAACCTTAGATCTGTCCTTACTATCGCATTTCAGTTTACCTTTGAGAATCATCTGCGTGACAATGTTGCTGCCATGGCTCGTCAATATGTACGAAGTGTTGTTGGATCCGTTCAGAGGGTTGCCATGGCTATTGCTCCATCTCGCCAAGGTCCCCAGCTTGGTCCAAAATCACTTCCTGGTTCTCCAGAAGCTCATGCTTTAGCACGATGGGTCTGTAGAAGCTACAGGATGCACACTGGTGCTGAGCTTTTCCGTGTCGAGTCTACAGCTAGTGATGCAATCTTGAAGCAACTTTGGCACCATTCTGATGCAATCATGTGCTGTTCTGTGAAAACAACTGCATCTCCAATATTCACCTTTGCAAACCAAGCTGGACTAGACATGCTTGAAACAACTCTAGTTGCACTTCAGGACATAATGCTGGATAAAGTACTTGATGAAGCTGGCAGAAAGATTCTTTGCTCTGAATTCTCCAAGATAATGCAACAGGGTTATGCTTATCTGCCAGCAGGGATATGTGTATCAAGCATGAACAGGCCAGTTTCTTATGAGCAGGCCATTGCATGGAAAGTTCTTAATGATGATGATGCCAATCACTGTCTAGCATTCATGTTCATCAACTGGTCTTTTGTCTGA 2541 0.4498 MMALSMHKDANNQMDAGKYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTVSASAATTTDNSCDSVVMSGQNQQQNPHQRPQRDANNPAGLLAVAQETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPTKVAEILKDRLSWYRDCRCVDVLNIVPTGGGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLNVSTGGPTGPASTNFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKLTIAALQHVRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLLGNDGVEDVTISVNSSPNKFLGSNYNSSMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKSSPYAVPCARPGGFPSSQVILPLAPTVEHEEFLEVVRIEGHAFTPEDVALARDMYLLQLCSGIDENSIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSDVPATSRTLDLASTLEVGSSNARAAGEGGDAYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPSRQGPQLGPKSLPGSPEAHALARWVCRSYRMHTGAELFRVESTASDAILKQLWHHSDAIMCCSVKTTASPIFTFANQAGLDMLETTLVALQDIMLDKVLDEAGRKILCSEFSKIMQQGYAYLPAGICVSSMNRPVSYEQAIAWKVLNDDDANHCLAFMFINWSFV* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3825 846 CDD homeodomain 18 78 IPR001356 GO:0003677
Psa1g3825 846 Pfam MEKHLA domain 701 845 IPR013978 -
Psa1g3825 846 Gene3D - 10 84 - -
Psa1g3825 846 SMART START_1 167 377 IPR002913 GO:0008289
Psa1g3825 846 Coils Coil 83 107 - -
Psa1g3825 846 Gene3D - 194 379 IPR023393 -
Psa1g3825 846 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Psa1g3825 846 CDD START_ArGLABRA2_like 162 378 - -
Psa1g3825 846 SMART HOX_1 15 81 IPR001356 GO:0003677
Psa1g3825 846 CDD bZIP 70 109 - -
Psa1g3825 846 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Psa1g3825 846 Pfam START domain 168 376 IPR002913 GO:0008289
Psa1g3825 846 SUPERFAMILY Bet v1-like 415 602 - -
Psa1g3825 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 7 846 IPR044830 GO:0003700
Psa1g3825 846 SUPERFAMILY Bet v1-like 168 379 - -
Psa1g3825 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 7 846 - -
Psa1g3825 846 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Psa1g3825 846 ProSiteProfiles START domain profile. 158 359 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3825 Psa-Chr1 318136799 318142571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3825 1 846 Homeobox Transcription Factor Family AT2G34710 77.506 0.0 1373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa1g3825 START 2.4e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3825 K09338 - gmx:100779499 1545.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3825 1 318136799 318142571 Psa1g3825 1 318136799 318142571 ECH