Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3822 ATGACTTCTTCTACTCATGATCCCACAGATAACGAGGCTGATGGACAAGAGCAGTCAGAATCACAGATGCAGCCTGTATCTGCAAATGAAATTTCTCATGCTGGTATTGATACTCAGGTTGTTCAATACGTAGCACCTCCGCAGCTTGGCCCTGGACATGCTATGGTGCCACCTGCTTATCCATATCCGGATCCCTACTACAGAAGCATGTTTGCTCCCTATGATGCACAAGCTTATCCGCCACAGCCCTACGGTGGACATCCAATGGCCAATCTTCAGCTAATGGGAATTCAGCATGCAGGTGTTCCTTTACCAACTGATGCAGTCGAGGAGCCTGTGTTTGTCAATGCGAAACAGTATCATGGTATTTTAAGACGCAGGCAGTCTCGTGCTAAAGCTGAATCAGAAAAGAAAGTTACAAGGAATCGGAAGCCATACTTGCATGAATCACGACACTTGCACGCACTGAAAAGAGCAAGAGGATGCGGAGGTCGGTTCCTGAATTCAAAGAAAGACGAGAATCAACAGGACGAGGTTGGATCAGCTGACAACTCACATTCCAATATCAATCTCAATTCTGATAGAAATGATCTCGCACCATCTGATAAAAATTCTTGA 618 0.4547 MTSSTHDPTDNEADGQEQSESQMQPVSANEISHAGIDTQVVQYVAPPQLGPGHAMVPPAYPYPDPYYRSMFAPYDAQAYPPQPYGGHPMANLQLMGIQHAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESEKKVTRNRKPYLHESRHLHALKRARGCGGRFLNSKKDENQQDEVGSADNSHSNINLNSDRNDLAPSDKNS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3822 205 MobiDBLite consensus disorder prediction 165 179 - -
Psa1g3822 205 PRINTS CCAAT-binding transcription factor subunit B signature 112 134 IPR001289 GO:0003700|GO:0006355
Psa1g3822 205 PRINTS CCAAT-binding transcription factor subunit B signature 143 166 IPR001289 GO:0003700|GO:0006355
Psa1g3822 205 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 187 - -
Psa1g3822 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 111 166 IPR001289 GO:0003700|GO:0006355
Psa1g3822 205 ProSiteProfiles NF-YA/HAP2 family profile. 109 169 IPR001289 GO:0003700|GO:0006355
Psa1g3822 205 SMART cbf3 108 169 IPR001289 GO:0003700|GO:0006355
Psa1g3822 205 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 187 IPR001289 GO:0003700|GO:0006355
Psa1g3822 205 MobiDBLite consensus disorder prediction 180 199 - -
Psa1g3822 205 ProSitePatterns NF-YA/HAP2 subunit signature. 114 134 IPR018362 GO:0003677|GO:0016602
Psa1g3822 205 Gene3D - 109 170 - -
Psa1g3822 205 MobiDBLite consensus disorder prediction 1 34 - -
Psa1g3822 205 MobiDBLite consensus disorder prediction 163 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3822 Psa-Chr1 317991535 317999021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3822 1 205 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.623 5.08e-67 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Psa1g3822 CBFB_NFYA 2.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3822 K08064 - gmx:100809036 338.191