Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3818 ATGTCAGCTAATAATCACCTAATGGATCTTGGAAGGCCCGCGTCAGGTAGAAGAAGATTGAAAGATTTATTGCTTCAGAAGGATAATCGTATTTGTGCTGATTGTAATTCTCCAGATCCTAAATGGGCGTCTGCTAACATTGGGGTGTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACTCATATATCAAAGGTTTTGTCTGTGACATTGGATGAATGGTCAGATGATGAAGTAGATGCAATGATAGAAGTTGGGGGAAATGCTTCAGCTAATTCAATTTACGAGGCTTATTTTCCTGAAGGATATACAAAACCCGGACCAGATGCCAGTCACGAGCAGCGCTCAAAGTTTATACGGTCAAAATATGATATGCAAGAATTTTTGAAGCCTAGTTTGCGCATTGTGTCTGGAAAAAGCAGCCTATCAAGTTCTTCCAAAAGTAGTTTCATGGATAGTTTTAGAAGTGCTGGCTCACAGAGAATGGAAGGTATGGTAGAATTTATTGGAATGTTAAAGGTGAAAGTGATTAAAGGCACAGATTTAGCCATCCGGGACATAAAGTCAAGTGACCCATATGTTGTTTTGAACCTCGGCACACAGACTATACAGACAAGTGTAGTGAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACATATGCTGTCTGTTCCGGAGGATTATGGACAGCTGAAATTGAAAGTATATGATCATGACACATTTTCGGCCGATGATATAATGGGGGAAGCCGACATTGATCTTCAGTCACTAATAACATCTGCCATGGCATTTGGAGATGCTGGAATGTTTGGAGATATGCAGATCGGAAAATGGTTGAAATCTGACGACAATGCACTTATTGAGGATAGTGCAGTCCTAATTACTGATGGCACAGTTAAACAAATGATGACACTCAAACTCCAGAATGTTGAATCTGGCGAAATAGATTTAGAACTCGAATGGATTTCTCTTGATCAATAA 990 0.397 MSANNHLMDLGRPASGRRRLKDLLLQKDNRICADCNSPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEVDAMIEVGGNASANSIYEAYFPEGYTKPGPDASHEQRSKFIRSKYDMQEFLKPSLRIVSGKSSLSSSSKSSFMDSFRSAGSQRMEGMVEFIGMLKVKVIKGTDLAIRDIKSSDPYVVLNLGTQTIQTSVVKSNLNPVWNEEHMLSVPEDYGQLKLKVYDHDTFSADDIMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNALIEDSAVLITDGTVKQMMTLKLQNVESGEIDLELEWISLDQ* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3818 329 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Psa1g3818 329 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Psa1g3818 329 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Psa1g3818 329 CDD ArfGap 20 126 - -
Psa1g3818 329 Gene3D C2 domain 171 329 IPR035892 -
Psa1g3818 329 Pfam C2 domain 174 263 IPR000008 -
Psa1g3818 329 Gene3D Arf GTPase activating protein 6 137 IPR038508 -
Psa1g3818 329 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 329 IPR044518 GO:0005096|GO:0005543
Psa1g3818 329 SMART arf_gap_3 17 139 IPR001164 GO:0005096
Psa1g3818 329 SUPERFAMILY ArfGap/RecO-like zinc finger 17 134 IPR037278 -
Psa1g3818 329 CDD C2_ArfGAP 172 316 - -
Psa1g3818 329 ProSiteProfiles C2 domain profile. 155 270 IPR000008 -
Psa1g3818 329 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 131 IPR001164 GO:0005096
Psa1g3818 329 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 10 329 - -
Psa1g3818 329 SMART C2_3c 174 269 IPR000008 -
Psa1g3818 329 Pfam Putative GTPase activating protein for Arf 18 133 IPR001164 GO:0005096
Psa1g3818 329 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 171 325 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3818 Psa-Chr1 317910126 317916634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3818 10 329 C2H2 Transcription Factor Family AT4G21160 72.121 0.0 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3818 K12486 - gmx:100810806 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3818 1 317910126 317916634 Psa1g3818 1 317910126 317916634 ECH