Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3817 ATGGCTCACATCTGCCAATGTCTGAGTCGACTGTTAACCTTCCGGCAAGACTTCCCGGTAACCATTTCCGGCAACCACCGCAAAACCGGGCAACAGTTTGTGGTGGAAGTGGCATCACTAGCACACGGCCTTCTCCAGCTTGGAGTCTCACCCGGTGACGTTATCGCCATCTCTGCATACAACAGTGATTCGTATTTGGAATGGTTATTAGCCATTGCATTTGTTGGAGGAATTGCCGCTCCTTTGAACTATCGCTGGAGTTTTGAAGAGGCGAGGTTTGCAATGGCAGTAGTGAAGCCAGTGATGTTAGTGATTGATGAGAGTTGCTATTCATGGTACTTCAAATTCCAACAAACTGATATTCAATCTTTGAAGTGGCGTGTTTTGTTGGATTCTCCTTCTTCAGATTTTGCAAAGAAATGGAATGTGTTGACTCCAGGAATACTTAAGAAGCATATTGTGAAACCTATAGAGTTTAATTACTCCTGGGCACCTGAAGGAGCTGTCATAATATGCTTTACTTCAGGAACTACTGGAAAGCCCAAGGGAGTGACAATAAGCCATGAAGCTTTGATCATACAGTCCCTAGCAAAGATTGCAATAGTTGGATATAGTGAAGATGATGTTTATCTTCATACTGCTCCATTATGTCACATTGGTGGCTTGTCATCCGCAATGGCCATGCTCATGGTTGGAGGTTGCCATGTATTCATGCCAAAGTTTGATGCTGAATTAGCTGTTGATGCCATAGAACAACATACTGTCACATCTTTTATCACAGTTCCTGCCATAATGGCCAGTTTGATTTCTATTGTTAGGCACAAAGAAACATGGAAAGGTGGAGAACTTGTCAAAAAAATACTCAATGGGGGTGGAAGTCTCTCACTTGAGCTTATCAAAGACAGTAACATATTCTTCCATAAAGCTAAGCTTATTTCAGCTTATGGGATGACAGAGGCATGCTCTTCACTGACATTCTTGACGCTATATGATCCAATGCAAAAAACCACAAGCCGTCCTTTTCAAACATATGGTGAGGTAGAATCCAAACATCTCATTCACCAACCACAAGGTGTTTGTGTTGGCAAGGCTGCACCTCATGTAGAGCTGAAGATATGTACAGATTCTTCTGGTGACACTGGAAGAATTTTAACTAGAGGACCACATTTAATGGTCAGGTATTGGGATCAAACTCTCACAACCTCATCTAATCAGAGGAATGAAGTATGGCTTGACACAGGTGACATTGGATCCATGGACTGTCATGGTAATTTGTGGCTCCTTGGACGTACAAATGGTCGCATCAAGAGTGGCGGGGAGAATATTTACCCTGAAGAGGTTGAGGCAATTCTACTAGTACACCCAGGGGTTGCAAATGTTGTTATTGTGGGAATTCCAGATGCTCGTTTCACAGAGCTGGTAGCAGCATGTATCCAACCTAGTGAAAATTGGCAATGGTTAGAGCATTCTACTTCAAATGAAGAGTATCACTTATCTAAAAAGAATCTCCAACAATACTGTTTGGAAAATAGTTTAAGCAGGTTTGTGTCCCAAATTTTACTCATGATTGTTAAGCTAGATTTTGATTGA 1590 0.4201 MAHICQCLSRLLTFRQDFPVTISGNHRKTGQQFVVEVASLAHGLLQLGVSPGDVIAISAYNSDSYLEWLLAIAFVGGIAAPLNYRWSFEEARFAMAVVKPVMLVIDESCYSWYFKFQQTDIQSLKWRVLLDSPSSDFAKKWNVLTPGILKKHIVKPIEFNYSWAPEGAVIICFTSGTTGKPKGVTISHEALIIQSLAKIAIVGYSEDDVYLHTAPLCHIGGLSSAMAMLMVGGCHVFMPKFDAELAVDAIEQHTVTSFITVPAIMASLISIVRHKETWKGGELVKKILNGGGSLSLELIKDSNIFFHKAKLISAYGMTEACSSLTFLTLYDPMQKTTSRPFQTYGEVESKHLIHQPQGVCVGKAAPHVELKICTDSSGDTGRILTRGPHLMVRYWDQTLTTSSNQRNEVWLDTGDIGSMDCHGNLWLLGRTNGRIKSGGENIYPEEVEAILLVHPGVANVVIVGIPDARFTELVAACIQPSENWQWLEHSTSNEEYHLSKKNLQQYCLENSLSRFVSQILLMIVKLDFD* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3817 529 SUPERFAMILY Acetyl-CoA synthetase-like 4 494 - -
Psa1g3817 529 PANTHER ACYL-COA SYNTHETASE FAMILY MEMBER 2, MITOCHONDRIAL 3 515 - -
Psa1g3817 529 CDD AFD_class_I 171 516 - -
Psa1g3817 529 Pfam AMP-binding enzyme C-terminal domain 446 488 IPR025110 -
Psa1g3817 529 PANTHER ACYL-COA SYNTHETASE 3 515 - -
Psa1g3817 529 Pfam AMP-binding enzyme 17 437 IPR000873 -
Psa1g3817 529 ProSitePatterns Putative AMP-binding domain signature. 171 182 IPR020845 -
Psa1g3817 529 Gene3D - 5 431 IPR042099 -
Psa1g3817 529 Gene3D - 433 520 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3817 Psa-Chr1 317878243 317882634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3817 40 464 Monolignol Biosynthesis Gene Families AT3G21240 29.291 4.88e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3817 K14760 - gmx:100809925 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3817 1 317878243 317882634 Psa1g3817 1 317878243 317882634 ECH