Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3808 ATGAAGCTCTTTACCCTTTTTGTGTTATCTGCATCTTTCTTTACCATTATGGGGCAGCTTCCTTCACAGGACATTTTAGCATTGTTGGAATTTAAGAAATGCATCAAGCATGACCCTACTGGTTATGTCCTGAATTCATGGAATGAAGAATCCATCGACTTTGACGGTTGTCCGTCTTCATGGAATGGTGTTCTTTGTAACGGTGGTAATGTTGCTGGTGTTGTCCTTGATAACTTAGGTCTCTCTGCCGATACTGACTTGAGTGTTTTTTCTAATCTGTCAAAGCTTGTGAAACTTTCCATGGCCAACAATTCCATATCAGGAAAATTACCTGACAATGTTGCCGATTTCAAAAGCCTTGAATTTCTTGATATTTCTAATAACCTCTTTTCCTCGTCCTTACCGGATGGAATCGGTAAATTTGATAGCTTGCAGAATCTGTCATTGGCTGGAAATAACTTTTCCGGTCCAATTCCGAATTCTATTTCAGAGATGTCTTCCATCAAATCTTTAGACTTGAGCTGCAACGCCCTTTCCGGAGCGCTTCCGCAATCGTTGACTAAGCTGGATAGTCTTGTATCTCTTAATGTGTCTCATAATGGCTTCACTGGAAAAATTCCCAGAGGTTTCGAGCTTATTTCCAACCTTGATAAACTTGACTTGCACGGGAATATGCTCGACGGTACTTTAGATCTTGAATTCATGCTTTTATCAAGTGCTAGCTATGTTGATTTAAGTGATAACATGCTGCTGAGTTCCGATTCCGGCAAATTTCTTCCGCAAATATCTGAAAGTATTAAGTATATGAATCTAAGCCATAACCAGCTTACTGGTTCATTGGTTGGTGGAGCTGAGCAACCGGTTTTCCAAAACTTGAAGGTGTTGGATCTCAGTTATAACCAATTGAATGGATTTATTCCAAGTGGCTTACTTAAAGGAGATTCTTTGGTTTTAACTGAACTTGATTTGAGCGCCAACAATCTCTCAGGACCGCTGAGTATAATTACATCCACGACACTTCACTTTCTGAATATCTCGTCGAATGGTTTCACTGGCCAGCTGCCGCCGCTGACTGGAAGTTGCGCTGTACTTGATCTGTCAAATAACAAATTTGAAGGAAATTTGACGAGGATGTTTAAATGGGGGAACATAGAATATCTTGATCTCAGCCGGAATCGTTTGACTGGGAACATCCCCGAGGTAACTCCTCAGTTTATGCGATTGAACTATTTGAACTTATCCGGTAATGATCTCGGTGACAACCTTCCAAATGTGTTAACACGGTATCCAAAGCTTAGAGTGCTTGATATCAGTTCCAACCAATTAAAAGGCTTTCTTCTACCAGATTTTTTCACAATGCCAACATTACAAGAGCTTCATCTCGAAAATAATTTGATCGATGGTGGCATCAATTTATCGTCTACTCTTGACCAATCTCATCTTCAAGTTCTTGATCTTTCTCACAACCAGCTTAGTAGCTTTTTTCCTGATAAGTTTGGATCATTAACTAGCCTGAGAGTGCTCAATATCGCTGGAAATAAATTTGCCGGTTCTCTACCAACTACTATTTCTGACATGAGTTCTCTAGACTCCTTGGATATATCGGATAATCGTTTTACCGGTCCACTTCCAAATAACATGCCAATTGGACTCAAAGACTTCAATGCTTCGGAAAATGATCTATCTGGAGTTGTCCCAGAAATTCTTAGGAAGTTCCCGACTTCTTCTTTCTTTCCTGGAAATGCAAAGTTACATTTTCCAAATGGTCCTCCTGGATCAACAGTTTCACCGGCCGATAGTTTGAAGGGGAGAAGGTCTATGACCACAGTTGTTAAAGTAATAGTTATAGTGTCATGTGTGGTTGCTCTCTTTATATTAATCTTACTGGCTGTCTTCATACACTACATACGTATGTCAAGGTCATCTACTCAAGAATATGATACAAGTAAGGATATCCGCGGGCGCCCTCAACCGATAATCTCTGGACCTATTCGTCCGACAGAGAGAGGCGCCCCTTTGGTTGTATCAGCTGAAGATCTCGTAGCCTCACGTAAAGGATCACCATCAGAAATAATTAGCCCTGATGAAAAAACTGCAGCTGTAGCTGGATTCTCCCCATCGAAACATAGCCACTTTTCATGGTCACCAGGATCTGGCGATTCATTGACTGCCGAAAATCTTGCAAGACTAGATACGAGGTCTCCAGATAGGTTGATTGGTGAGCTGCATTTTCTTGATGATACAATATCGCTGACACCCGAGGAGCTATCTAGGGCACCGGCTGAAGTTTTGGGAAGAAGTAGTCACGGTACTTCTTACAAGGCAACTTTGGATAATGGCGTGTTGTTGAGAGTGAAGTGGTTGAGAGAAGGAGTGGCGAAACAAAGGAAAGAATTTGTTAAAGAGATAAGAAAGTTTGCAAACATCAGGCATCCGAATGTCGTCGGTTTGAGAGGTTATTATTGGGGTCCTACGCAGCATGAGAAGCTCATTCTTTCAGATTACATTTCACCAGGAAGTCTTTCAAGTTTTCTTTATGATCGACCAGGAAGAAACGGTCCACCATTAACCTGGGCTCAGAGGCTCAAAATAGCAGTTGATGTAGCACGTGGCCTGAACTATCTCCATTTCGACCGAGCTGTTCCTCATGGGAACCTTAAAGCTACAAACGTCCTGTTAGACACACCTGATATGAACGCACGCGTTGCTGATTATTGTCTTCACCGACTTATGACTCAAGCTGGCACTATTGAACAGATTCTTGATGCCGGTGTCTTAGGTTATCGTGCACCAGAGTTAGCCGCTTCCAAGAAGCCAATGCCGTCCTTCAAGTCAGACGTCTATGCTTTCGGCGTTATACTTTTGGAGCTTTTAACTGGAAGGTGCGCTGGTGATGTGGTATCTGGTGAGGAGGGAGGTGTTGATCTTACAGATTGGCTAAGATTACGGGTAGCAGAAGGTCGAGGCTCGGAGTGTTTTGATTCTACTCTGATGTCAGAAATGGGAAATCCAGTTGTAGAAAAGGGAATGAAAGAGGTCTTGGGAATAGCGATCCGATGTATTCGATCGGTTTCCGAAAGACCTGGTATCAAAACTATATATGAAGATCTTTCTTCTATATAG 3123 0.4204 MKLFTLFVLSASFFTIMGQLPSQDILALLEFKKCIKHDPTGYVLNSWNEESIDFDGCPSSWNGVLCNGGNVAGVVLDNLGLSADTDLSVFSNLSKLVKLSMANNSISGKLPDNVADFKSLEFLDISNNLFSSSLPDGIGKFDSLQNLSLAGNNFSGPIPNSISEMSSIKSLDLSCNALSGALPQSLTKLDSLVSLNVSHNGFTGKIPRGFELISNLDKLDLHGNMLDGTLDLEFMLLSSASYVDLSDNMLLSSDSGKFLPQISESIKYMNLSHNQLTGSLVGGAEQPVFQNLKVLDLSYNQLNGFIPSGLLKGDSLVLTELDLSANNLSGPLSIITSTTLHFLNISSNGFTGQLPPLTGSCAVLDLSNNKFEGNLTRMFKWGNIEYLDLSRNRLTGNIPEVTPQFMRLNYLNLSGNDLGDNLPNVLTRYPKLRVLDISSNQLKGFLLPDFFTMPTLQELHLENNLIDGGINLSSTLDQSHLQVLDLSHNQLSSFFPDKFGSLTSLRVLNIAGNKFAGSLPTTISDMSSLDSLDISDNRFTGPLPNNMPIGLKDFNASENDLSGVVPEILRKFPTSSFFPGNAKLHFPNGPPGSTVSPADSLKGRRSMTTVVKVIVIVSCVVALFILILLAVFIHYIRMSRSSTQEYDTSKDIRGRPQPIISGPIRPTERGAPLVVSAEDLVASRKGSPSEIISPDEKTAAVAGFSPSKHSHFSWSPGSGDSLTAENLARLDTRSPDRLIGELHFLDDTISLTPEELSRAPAEVLGRSSHGTSYKATLDNGVLLRVKWLREGVAKQRKEFVKEIRKFANIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLSSFLYDRPGRNGPPLTWAQRLKIAVDVARGLNYLHFDRAVPHGNLKATNVLLDTPDMNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVVSGEEGGVDLTDWLRLRVAEGRGSECFDSTLMSEMGNPVVEKGMKEVLGIAIRCIRSVSERPGIKTIYEDLSSI* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3808 1040 Pfam Protein tyrosine and serine/threonine kinase 762 960 IPR001245 GO:0004672|GO:0006468
Psa1g3808 1040 PANTHER - 2 1040 - -
Psa1g3808 1040 Pfam Leucine rich repeat 143 201 IPR001611 GO:0005515
Psa1g3808 1040 Pfam Leucine rich repeat 363 418 IPR001611 GO:0005515
Psa1g3808 1040 Pfam Leucine rich repeat 479 539 IPR001611 GO:0005515
Psa1g3808 1040 SUPERFAMILY L domain-like 55 310 - -
Psa1g3808 1040 Gene3D Phosphorylase Kinase; domain 1 750 835 - -
Psa1g3808 1040 Gene3D Ribonuclease Inhibitor 22 186 IPR032675 -
Psa1g3808 1040 SUPERFAMILY RNI-like 265 539 - -
Psa1g3808 1040 ProSiteProfiles Protein kinase domain profile. 758 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g3808 1040 Gene3D Ribonuclease Inhibitor 187 259 IPR032675 -
Psa1g3808 1040 ProSiteProfiles Leucine-rich repeat profile. 291 312 IPR001611 GO:0005515
Psa1g3808 1040 Pfam Leucine rich repeat N-terminal domain 22 67 IPR013210 -
Psa1g3808 1040 SUPERFAMILY Protein kinase-like (PK-like) 761 1037 IPR011009 -
Psa1g3808 1040 Gene3D Transferase(Phosphotransferase) domain 1 837 1040 - -
Psa1g3808 1040 ProSiteProfiles Leucine-rich repeat profile. 480 501 IPR001611 GO:0005515
Psa1g3808 1040 Gene3D Ribonuclease Inhibitor 260 596 IPR032675 -
Psa1g3808 1040 SMART LRR_typ_2 93 116 IPR003591 -
Psa1g3808 1040 SMART LRR_typ_2 117 141 IPR003591 -
Psa1g3808 1040 SMART LRR_typ_2 479 501 IPR003591 -
Psa1g3808 1040 SMART LRR_typ_2 165 188 IPR003591 -
Psa1g3808 1040 SMART LRR_typ_2 289 313 IPR003591 -
Psa1g3808 1040 SMART LRR_typ_2 189 212 IPR003591 -
Psa1g3808 1040 SMART LRR_typ_2 502 526 IPR003591 -
Psa1g3808 1040 Pfam Leucine Rich Repeat 291 310 IPR001611 GO:0005515
Psa1g3808 1040 PANTHER OS07G0626500 PROTEIN 2 1040 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3808 Psa-Chr1 317605059 317608489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3808 24 1040 Receptor kinase-like Gene Family AT5G01890 29.338 9.76e-87 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa1g3808 PK_Tyr_Ser-Thr 1.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3808 - - gmx:100793639 1666.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3808 1 317605059 317608489 Psa1g3808 1 317605059 317608489 ECH