Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3793 ATGAATTTTTCAATAGGAGGCATGAGTGCGGCTGAGTCTGGTGACGAAGATATTGATAATTCACAAAATGATACAAGAGGTTCCTACAAACGTCTTACTTCTACTCAATCAACTATACTTGAAAATTTCATGAAGGAATGCCACCATCCAGACGATGCACAGCGACGTCAATTGGCTGAAGAGGTTGGGCTTGAGCCCAAACAAATCAAGTTTTGGTTTCAGAATAAAAGAACTCTCATGAAGAATCAACATGAGAGAGAAAACAACACTACTCTTCGTATGGAGAATGAAAGGATTCATAATGAAAACCTCTTAATCAAAGAGGCACTCAAGGCCACTATTTGTTCAACTTGTGGGGGTCCTCCATTTCCTAAAGAAGAGCATGAACATTTCATGCGCAACATGAAACAAGAAAATGCTGAGCTCAAACTAGAGTGTGACAAAGTGGCAAACCTTATTGCAAACTACATGGAGAAAAAGATATCTCTACCTGAGTTTGAGCAAGCTCTTGCTACTGTGAAATCGTTTTCAAGAGACAGAGACCTTGATCTTTCACAAACCCCAACGGCTTATGAAACCCTAAGGCATGTTCATGTTCATGTTCATGGTAATCTAACCATGAGAGAGGCTATGTTAGTGAACATCTCAGAGCAAAACCATGATGAACAAAAGAGAACCATGTCTCGAATTGCAACTATTGCAATGGAAGAGTTGGCTAGGCTTGTGAGAGTGAATGAGCCTTTTTGGGTTAGCGCTACACATGTTCACGATGGGAGATTCACTCTTGATCGTGAAAGTTACGAGCAAGTTTTTCCCAAGGATAATCACTTTCAAGGAGCAAATGTGTGCGAAGAATCTTCAAAATTTTCAGGAGTTGTGAAACTTAGTGCCTTGCATCTGGTTGACATGTTTCTGGACTCGGTCAAATGGAAAAACTTGTTCCCAACAATTATTACTAAAGCTGAAACTGTCAAAGTGTTTGAAACTGGTTCAACAGAAAATCGAGATGGAGCTTTGCTTTTGATGTATGAACAAATGCACATTTTATCCCCTCTTGTGCGTCCTCGCGAATTCAACATCATTCGCTACTGCAAACAAGTTGATGCTGGCGTATGGATGATTACTGATATGTCGATTGATTCATCTCAACCGAACACTACTCCTCTCTGTCAATCCTGGAAGCATCCATCCGGATGCATAATCCGCGAACTGCCTCACGGTGCCTGTCTGGTTACTTGGGTTGAACATGTGGAAGTGGAAGATAAGATCCATACACACCCTGTGTATAGACATGTTATCAGTAACTTTAATTTATATGGAGCTGAAAGCTGGATTAAGGAGCTTCAAAGAATGTGCGAAAGATCTCTCAGCTTTTATGTTGAAACTATACCTAATCAAGAAACTTCGGGAGTGATCACATCAATTGATGGGAGGAAAAGTGTGATGAAGTTTGCTCATAGAATGGTTAAAATGTTCTGTGAAAGTTTAACAATGACAGGCCAATTGGAATTTCAGGATGTAACTCTTGACAGCATTGGCGGAGTTAGAGTTTCTATTCGCAAAAACAACATTTTTGGCCAACCAAAGGGCACGGTTGTTGTCGCTGCTACTACCATTTGGCTCCCTCTCCCTGCTCAAAAAATCTTTGAGTTCCTCAGAGATCCTACAAATCGATCTAAGTGGGATGTCCTTTCTTTTGGAAATTCAATGATTGAGATTGCACACATTTTCAATGGACCCTATCCTGGCAACTGCATTTCAATTCTTCAGCCGTCCATCCCGACCGAAGACCAACGGGTGATCCTCCAAGAAAGTTTCACATCTTCTGTGGGATCTTACGTTATATTCGCTCCAACAGACAGAACATCTATGAACATAGCCATTCGAGGTGACGAGTCGAAGGGTCTAGAAATTCTTCCAACGGGATTCGTTGTGTGTTCAAAATCTCGTCCAAGTGCCGCTTTTGAAGCATCTGGCAATATCGGAAGAGTTGGTGTTGGTGGTGGTGATGCTGGATCGTTGTTAACTTTAGCTTTTCAAATTTTGATTTCTAGTTCAAATGGAACTGACACACAGCAACATATGGAATCTATGGCTGCTGTCAACTCCCTTCTGGCCGGTACTATTCGAAAGGTTCAGGAAGCTCTCAAGTGA 2154 0.4141 MNFSIGGMSAAESGDEDIDNSQNDTRGSYKRLTSTQSTILENFMKECHHPDDAQRRQLAEEVGLEPKQIKFWFQNKRTLMKNQHERENNTTLRMENERIHNENLLIKEALKATICSTCGGPPFPKEEHEHFMRNMKQENAELKLECDKVANLIANYMEKKISLPEFEQALATVKSFSRDRDLDLSQTPTAYETLRHVHVHVHGNLTMREAMLVNISEQNHDEQKRTMSRIATIAMEELARLVRVNEPFWVSATHVHDGRFTLDRESYEQVFPKDNHFQGANVCEESSKFSGVVKLSALHLVDMFLDSVKWKNLFPTIITKAETVKVFETGSTENRDGALLLMYEQMHILSPLVRPREFNIIRYCKQVDAGVWMITDMSIDSSQPNTTPLCQSWKHPSGCIIRELPHGACLVTWVEHVEVEDKIHTHPVYRHVISNFNLYGAESWIKELQRMCERSLSFYVETIPNQETSGVITSIDGRKSVMKFAHRMVKMFCESLTMTGQLEFQDVTLDSIGGVRVSIRKNNIFGQPKGTVVVAATTIWLPLPAQKIFEFLRDPTNRSKWDVLSFGNSMIEIAHIFNGPYPGNCISILQPSIPTEDQRVILQESFTSSVGSYVIFAPTDRTSMNIAIRGDESKGLEILPTGFVVCSKSRPSAAFEASGNIGRVGVGGGDAGSLLTLAFQILISSSNGTDTQQHMESMAAVNSLLAGTIRKVQEALK* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3793 717 Gene3D - 12 99 - -
Psa1g3793 717 MobiDBLite consensus disorder prediction 1 30 - -
Psa1g3793 717 ProSiteProfiles START domain profile. 220 457 IPR002913 GO:0008289
Psa1g3793 717 SMART HOX_1 25 87 IPR001356 GO:0003677
Psa1g3793 717 CDD homeodomain 26 84 IPR001356 GO:0003677
Psa1g3793 717 Coils Coil 125 159 - -
Psa1g3793 717 CDD START_ArGLABRA2_like 224 453 - -
Psa1g3793 717 SUPERFAMILY Homeodomain-like 19 87 IPR009057 -
Psa1g3793 717 ProSitePatterns 'Homeobox' domain signature. 58 81 IPR017970 GO:0000981|GO:0006355
Psa1g3793 717 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 21 716 - -
Psa1g3793 717 Gene3D - 262 454 IPR023393 -
Psa1g3793 717 SUPERFAMILY Bet v1-like 220 454 - -
Psa1g3793 717 SUPERFAMILY Bet v1-like 478 646 - -
Psa1g3793 717 Pfam Homeodomain 28 81 IPR001356 GO:0003677
Psa1g3793 717 Pfam START domain 233 454 IPR002913 GO:0008289
Psa1g3793 717 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 716 IPR042160 -
Psa1g3793 717 SMART START_1 229 454 IPR002913 GO:0008289
Psa1g3793 717 ProSiteProfiles 'Homeobox' domain profile. 23 83 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3793 Psa-Chr1 317173740 317178383 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3793 29 716 Homeobox Transcription Factor Family AT1G73360 39.260 9.10e-167 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa1g3793 START 3.6e-33 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3793 K09338 - gmx:100795075 736.873