Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3766 ATGATTCTATCATTCACAATATTTCATATATTTGTTTTAATAGTATCTCCCATATCTCCTCCACTAGCATCAGCACAAGACAAAGATGGAACCATAGCACGAGATGGTTGTAATTCAACATGTGGAACAGTTTCAATCCCTTTCCCATTCGGAATGCATGAACCTAATTGCTATGCAGACAAATGGTTCGAAATAGAGTGCAAATTTGACAACAACTCTTCTTCTGATGTTCCTTACTTGAAGTCGTTAAATCTTGAGGTAGATGGATTTTACAATAACGTGGTTGTGATTATGAATCCAATTTACCGTTCCAATTGCCGTCATAAGGACAAAACCAGTAGCAACAGAAACAAAACCGTTACTCTTAGAGGCAGTCCTTTCGTATATTCACAGGCTGAAAACTCATTTATAGCTGTTGGATGTAACATTCTTGCTTTTCTTCAGTCAAATGGGACAACGGTCGGTGGTTGTATGTCAATTGGTCCCACTGGCAACAACAATATCAACATCAATATCAGCAGGTGTTATTGCGTGACATCGGTGCCTCCGCGTCTTTCAGAGTTTAATGCAATGCTACAAGGTTTAACCGATCAAAGTAGTGATGGTTGTAGTTATGCTTTGATTACATATGATAACAGGACGCCTTTAGAGAATTCAAATTATATGAACACGGATGAGATTGAGATGTTGAACGATTTGAAGAATATGGAATATGCTCCTGTAATGCTTGAGTGGGAGATTTTGAATTATATGTTAATTAACTCCACATTTCAACTACCTCCAAATTGTTACGATTCCAACGTTACTTCTTTAAGTAATAACAGAACCACCGGCCGGCAATGTCAATGCTTATTCCGTTCCAATGGCAATCCATATCTTGCTGGAGGCTGCCCAGATTCTGTTTGTTACTACCACAACTATGGTGGTATCATTTGTGAATGCTTCGAGGGTTACCGTGGCAATCCCTTCCAGGCAGGAGGCTGCAGAGAAATTCCAGGGTACTTTCATAAGAATAATCGATGGAAGAAGTCGGTTATTTTAGGCATTTCGTCAAGTTTTGGATCCCTCGTTTTTCTCATTGGTATATGGTTATTCTACAAAGCTATGAAACGAAGAATGATAAAGAAACGCAAAGAAAAATTCTTCAAAAGAAATGGTGGTTTGTTGTTACAGAAAAGAATGTCGGCAGGAGAAGTAAATGTTGATAGAACTATTCTCTTCACCTTAAAAGATTTAAAGAAAGCCACTGACAGTTTTAATAAGGATAGAGTTCTTGGAAAGGGAGGCCAGGGTACAGTTTACAAAGGCATGTTGGTGGATGGTAAGATTGTTGCGGTGAAAAAGTTTAAGGTTGAAGGAAAGGTTGAAGAGTTCATCAATGAGTTTGTTATCCTTTCGCAAATCAATAACAGAAATGTTGTCAAATTATTGGGATGTTGCTTGGAGACAGAAATTCCATTGCTTGTTTATGAATTCATTCCCAATGGTAACCTTTTTGAGTATCTGCATGACCAGAATGAGGACATACCAATGACATGGGACATGCGCTTGAGGATTGCTAGTGAAGCAATATCTTCTACAACAAGATCTGAGGAATCACAAAATTTAGCTTCCTATTTTGTTCAGTGTATAGAGGAGAATATGTTGTTTGACATTATTGACAAAAGGGTCATAGAAGGAGGAGAGAAAGAACATATTATTGCAGTTGCAAATCTTGCATATAGATGCTTGGAAATAAATGGAAGAAAACGACCAACTATGAAAGAAGTCACATTAGAATTGGAAGGGACTAGGGGATTCAATAAGAAGCTTAATGCACATCAAAATTACGAGGAAAATGAGTTTTCAGGAATTGAAGAGTGCCAACCTTGGGATGGGTTTTCTGCATCAAACTCATTACCAATTATCAACAGCCAAACACACTCTACAGACTCTATGCATATTCTTGCATTAGAATAG 1959 0.3783 MILSFTIFHIFVLIVSPISPPLASAQDKDGTIARDGCNSTCGTVSIPFPFGMHEPNCYADKWFEIECKFDNNSSSDVPYLKSLNLEVDGFYNNVVVIMNPIYRSNCRHKDKTSSNRNKTVTLRGSPFVYSQAENSFIAVGCNILAFLQSNGTTVGGCMSIGPTGNNNININISRCYCVTSVPPRLSEFNAMLQGLTDQSSDGCSYALITYDNRTPLENSNYMNTDEIEMLNDLKNMEYAPVMLEWEILNYMLINSTFQLPPNCYDSNVTSLSNNRTTGRQCQCLFRSNGNPYLAGGCPDSVCYYHNYGGIICECFEGYRGNPFQAGGCREIPGYFHKNNRWKKSVILGISSSFGSLVFLIGIWLFYKAMKRRMIKKRKEKFFKRNGGLLLQKRMSAGEVNVDRTILFTLKDLKKATDSFNKDRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGKVEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDMRLRIASEAISSTTRSEESQNLASYFVQCIEENMLFDIIDKRVIEGGEKEHIIAVANLAYRCLEINGRKRPTMKEVTLELEGTRGFNKKLNAHQNYEENEFSGIEECQPWDGFSASNSLPIINSQTHSTDSMHILALE* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3766 652 Pfam Protein tyrosine and serine/threonine kinase 421 515 IPR001245 GO:0004672|GO:0006468
Psa1g3766 652 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 529 648 IPR045274 GO:0007166
Psa1g3766 652 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 14 523 IPR045274 GO:0007166
Psa1g3766 652 Gene3D Transferase(Phosphotransferase) domain 1 404 525 - -
Psa1g3766 652 Gene3D Transferase(Phosphotransferase) domain 1 526 620 - -
Psa1g3766 652 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 529 648 - -
Psa1g3766 652 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 14 523 - -
Psa1g3766 652 Pfam Wall-associated receptor kinase galacturonan-binding 37 81 IPR025287 GO:0030247
Psa1g3766 652 SUPERFAMILY Protein kinase-like (PK-like) 401 524 IPR011009 -
Psa1g3766 652 ProSiteProfiles Protein kinase domain profile. 419 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3766 Psa-Chr1 315658486 315661151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3766 519 614 Receptor kinase-like Gene Family AT1G69730 40.625 9.54e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Psa1g3766 PK_Tyr_Ser-Thr 5.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3766 - - mtr:MTR_2g031530 636.336