Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3750 ATGGGTGCTCCGAAGCAGAAATGGACATCAGAAGAGGAAGCGGCCCTCAAAGCTGGAGTTGTCAAGCATGGGGTGGGTAAATGGCGTACAATACTTAAGGATCCTGAGTTTAATTGTGTCTTATTTCTGCGCTCAAATGTTGATCTCAAGGATAAATGGAGAAATTTGAGTGTGATGGCAAATGGATGGACTTCCAGGGAGAAGTCTAAGGTGGCAATCAAAAGGGGGCACCATCATGGATCAAAATATGATGAAAACTCTCTGGCTGTCATTCCTGCTAGTCCAAGTGACGATGAAATTGTTGATGTTAAGCCCCTTCAAGTTTCAAGGGATATGCTCCAGATTTCTGGTCCGAAAAGGTCTATTGAAAGATTCAGATTGGATAACCTTATCATGGAAGCTATATCTAGCATGAATGAGCTTGGTGGTTCTAATAAAACGACTATTGCTTCTTTCATATTGGACCATTATTATCCACCGGCAGACTTCAAAAATCTATTGTCAGCAAAACTGAAGTATCTTGCATCTAGTGGGAAACTGATCAAGGTTAAACGTAGGTATAGGATTGCACCTACCCCAGCATACTCTGACAGAGGAAGACACCCACCCATGTTATTATTGGAAGGGAGGCAGAAAGGCTCTATGAAATTTGACATTGATGATACCAATATGCCTTCACAGTCTGAGATAGATTATGAGTTAGAAAAGCTAAGGTCCATGTCTGCAGAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCTGAAGCGGAAGCTGCCATAGCGGAAGCTGAAGAGGCGACAAAGGAAGCAGAGGCTGCAGAAGCAGATGCAGATGTAGCGCAAGCTTTTGCAGATGCTGCATTGAAATCAGTGAAGGTGAAGAAGACCACCCCAAAGACGATGATCCCTGCTTGA 915 0.4404 MGAPKQKWTSEEEAALKAGVVKHGVGKWRTILKDPEFNCVLFLRSNVDLKDKWRNLSVMANGWTSREKSKVAIKRGHHHGSKYDENSLAVIPASPSDDEIVDVKPLQVSRDMLQISGPKRSIERFRLDNLIMEAISSMNELGGSNKTTIASFILDHYYPPADFKNLLSAKLKYLASSGKLIKVKRRYRIAPTPAYSDRGRHPPMLLLEGRQKGSMKFDIDDTNMPSQSEIDYELEKLRSMSAEEAAAVAARAVAEAEAAIAEAEEATKEAEAAEADADVAQAFADAALKSVKVKKTTPKTMIPA* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3750 304 SMART h15plus2 121 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa1g3750 304 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 299 - -
Psa1g3750 304 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Psa1g3750 304 SUPERFAMILY "Winged helix" DNA-binding domain 123 200 IPR036390 -
Psa1g3750 304 Coils Coil 246 283 - -
Psa1g3750 304 Gene3D - 122 198 IPR036388 -
Psa1g3750 304 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Psa1g3750 304 SMART sant 4 59 IPR001005 -
Psa1g3750 304 Pfam linker histone H1 and H5 family 128 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa1g3750 304 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 123 191 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa1g3750 304 Gene3D - 2 59 - -
Psa1g3750 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Psa1g3750 304 PANTHER SINGLE MYB HISTONE 4 1 299 IPR044597 GO:0003691
Psa1g3750 304 CDD SANT_TRF 6 56 - -
Psa1g3750 304 SUPERFAMILY Homeodomain-like 2 72 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3750 Psa-Chr1 314894320 314901952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3750 1 242 Single Myb Histone (SMH) Gene Family AT1G49950 56.452 2.33e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa1g3750 Linker_histone 2.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3750 K09422 - gmx:100780698 330.102