Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3744 ATGTGTAGTAGTAGTATCTTTGTGTCATCAACAACAAGTATGGACAATTACCAAGGTGATTTAACTGACATAATCAGAGCTACTTCTACTGCTACTGCTGCTGGAGCATATAGTACAATAACTTCATCATCATCTTCTGAACCTCTTTTGCAACATCATCATCATGATAATCAGTGGCATCCTCATCCTCATCCTCAGCATCAACCTATGAGTTTCTCTAATTCCATTCTTGAAGATAACAGATCAGGAACAACCAACAACATCAACATCAACATGAACATCTTTGGTGATCCATTATTCTCAACTTTAAGAGATCCATTTTTACAAGAGCTTGATCATATACCTTCTTCTTCCTATTTCAACATCCCAACTAGTATAATTGATGTTGCAGCTTCTGGTGTTAGTGTTACCACTTCATCATCTTCTTCTGCTTCTGCTTCTGCTTTTGCACTTGATCAAGATCATCATCAACATCATCAACATCATCAACAGCATGAGATGATGAGATCAGGTTCAAGGCCATGTAAAAACATATTCTCAAACATGATTCAGATCTCTCCTAATGCAACAAAGATATCAAATTATGAATCTTCTTCTTCAACCATGGCACCTTCTCCAAGGCAAATTAAACCTGTTGTTGCTGTTTCAACCAACATCAATATTAATGCTAAGGATTCTCTTCTAGACAACACAGGAGGAACAGTTCAGATCTCATCTTCAAGGAATAATACAGGCCTTAAACGAAGGAAGAATCAGGCAAAAAAGGTGGTTTGTATTCCTGCACCAGCAGCTGCAAACAGTAGACAAACTGGTGAAGTTGTTCCTTCAGATTTATGGGCTTGGAGAAAGTATGGTCAGAAACCCATTAAAGGTTCACCTTATCCAAGGGGTTATTATAGATGCAGCAGTTCAAAGGGTTGTTCTGCCCGGAAACAAGTTGAGAGAAGCCGAACAGATCCAAACATGTTAGTTATTACCTACACTTCAGAACACAATCATCCATGGCCAACACAAAGAAATGCTTTAGCAGGTTCAACAAGATCTCAACCATCCAAAAACAATACTTCCATGAAAAATTCAGAAGCTTCATCTCAACCACAAAATGACACAATAACAACAACAACAAAGCCAAAAGAAGAACATCATCAAGAGAGTGATGGAAATGGAAATGATTCACCAGTTGTTAACAGTGTGAAGGAAGAGAATATGGAAGATATAGAGAAGTTGCAAATTGAGATGGATGAAGGAGATCAATTCAATGATGCACTTTCTTATAAACCTTGTTTGATGGAAAATAATCAAAGTCATGAGGATTTTTTTGCTGAGTTAGATGAAATTGAAGCTGATCCATTAAACCTATTGTTTAATCAAGGTTTTGGTGGTAATTCAAGCAATGATATTATTCATCAAAGAGATCATCAATCCAAGAGTTTAGATGCATTTCATCTCTTTGACTGGTCTGGTGACAACAACAATACCAACAACTCATTTGAAGAACCAAACAAAAGAAGGTTATTATGA 1521 0.3682 MCSSSIFVSSTTSMDNYQGDLTDIIRATSTATAAGAYSTITSSSSSEPLLQHHHHDNQWHPHPHPQHQPMSFSNSILEDNRSGTTNNININMNIFGDPLFSTLRDPFLQELDHIPSSSYFNIPTSIIDVAASGVSVTTSSSSSASASAFALDQDHHQHHQHHQQHEMMRSGSRPCKNIFSNMIQISPNATKISNYESSSSTMAPSPRQIKPVVAVSTNININAKDSLLDNTGGTVQISSSRNNTGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNTSMKNSEASSQPQNDTITTTTKPKEEHHQESDGNGNDSPVVNSVKEENMEDIEKLQIEMDEGDQFNDALSYKPCLMENNQSHEDFFAELDEIEADPLNLLFNQGFGGNSSNDIIHQRDHQSKSLDAFHLFDWSGDNNNTNNSFEEPNKRRLL* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3744 506 ProSiteProfiles WRKY domain profile. 270 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa1g3744 506 MobiDBLite consensus disorder prediction 319 373 - -
Psa1g3744 506 MobiDBLite consensus disorder prediction 152 168 - -
Psa1g3744 506 Gene3D WRKY domain 249 329 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa1g3744 506 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 18 489 - -
Psa1g3744 506 MobiDBLite consensus disorder prediction 44 68 - -
Psa1g3744 506 SMART WRKY_cls 275 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa1g3744 506 MobiDBLite consensus disorder prediction 147 168 - -
Psa1g3744 506 MobiDBLite consensus disorder prediction 300 395 - -
Psa1g3744 506 Pfam WRKY DNA -binding domain 277 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa1g3744 506 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 18 489 IPR044810 GO:0003700
Psa1g3744 506 SUPERFAMILY WRKY DNA-binding domain 273 336 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3744 Psa-Chr1 314630743 314634940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3744 1 505 WRKY Transcription Factor Family AT1G30650 40.462 5.76e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa1g3744 WRKY 2.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3744 - - aprc:113852911 504.982