Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3733 ATGGCGAGAAAATACCAAGGACATGCTGTTGGAATAGACCTTGGCACAACTTACTCGTGTGTTGCAGTGTGGCAGGAGCAACATTGTCGAGTTGAGATCATTCACAATGATCAAGGAAACAGAATAACACCTTCGTTTGTTGCTTTCACAGAAAATCAGAGATTGATCGGTGATGCTGCTAAAAATCAAGCTGCTGCCAACCCTCAAAACACTGTCTTTGATGCTAAGAGGTTGATTGGTAGAAAGTTTAGTGATCAAGTTATTCAAGATGATATAATGTTGTGGCCATTCAAAGTCACTGCTGGTGTCAATGACAAACCTATGATAACGGTCAATTACATGGGTCAGGAGAAGAACCTATGTGCCGAAGAAGTATCCTCTATGGTGCTCACAAAAATGCGAGAAATTGCTGAGGCATATTTAGAATCACCGGTTAAGAATGCAGTTGTTACTGTGCCAGCTTATTTTAATGATGCTCAGCGAAAAGCCACTATAGATGCTGGTGTTATTGCTGGCCTCAATGTTATGAGGGTAATGAATGAACCTACTGCTGCAGCTGTTGCGTATGGTCTTGACAAGAGGACTGATTATGATGGAGAACGGAATATTTTTGTCTTTGATCTTGGTGGTGGCACTTTTGATGTGTCTCTACTAACTATTAAGGGTAATGCCTTCAAGGTTAAGGCAACTGCTGGAAACACTCACCTTGGTGGAGAAGACTTTGATAATAGAATGGTGAACTACTTTGTACAAGAGTTCAAGAGAAAGAACAAAGTGGATATTAATAGAAATGCCAAAGCATTGAGGAGGTTGAGAAGTGCTTGTGAGAAGGCAAAAAGATCACTTTCTTTCCTTGTTGTTGCAACTATTGAAGTAGATTCTTTATTTCAAGGCATTGACTTTTCTTCATCCATCAATAGAGCCAAGTTTGAAGAGATGAATATGGACCGATTGGTGCTGCAGGATGTTACACCATTGTCTCTTGGTATATCTGCATTAGGAGATATCATGAGTGTGGTGATTCCTAAGAACACTTGCATTCCTGTCAATAAGACAAAATCATGTGTTACAAGTCAAGATAACCAAACCATTGCTTTGATTAAGGTTTATGAGGGTGAGAGAACAAGAGCCAGTGACAACAATTTGCTTGGTTCTTTTACTCTTTCTGGCATTCCCCCATCTCCCCGCTGTTTCCCTTTTTCAGTTGTTTGTTTTTATATCAATGAAAATGGTATTTTGACTGTTTCAGCTAAGAATAATGCTTCTGGAACTTCCAACAAGATTACAATAACCAATCACAAAGAAAGATTGTCAATCGAGGATATTAAAAAATTAATTCAAGAAGCTGAGAATTACCATATTGAAGACAAGAAATTCCTCCGAAAGGCCAATGCAGTGAATGCATTGGATGACTACATTTACAAAATGACGAATACTTTAAAGAAAAAGGATATTAATTTGAAGCTCTCCTCACAAGAGATCCAGCTGATTGAAGATGCAATTGCAGTGGCTAAAAACCTCCTGGAAGAGAATAACAAGCTGGTTGAAATAGAAGTTCTGGAAGATCACCTAGAAGGGCTTGAGAGCAGGATGAAACACATTATAGCTAAGACTATTTAG 1620 0.3883 MARKYQGHAVGIDLGTTYSCVAVWQEQHCRVEIIHNDQGNRITPSFVAFTENQRLIGDAAKNQAAANPQNTVFDAKRLIGRKFSDQVIQDDIMLWPFKVTAGVNDKPMITVNYMGQEKNLCAEEVSSMVLTKMREIAEAYLESPVKNAVVTVPAYFNDAQRKATIDAGVIAGLNVMRVMNEPTAAAVAYGLDKRTDYDGERNIFVFDLGGGTFDVSLLTIKGNAFKVKATAGNTHLGGEDFDNRMVNYFVQEFKRKNKVDINRNAKALRRLRSACEKAKRSLSFLVVATIEVDSLFQGIDFSSSINRAKFEEMNMDRLVLQDVTPLSLGISALGDIMSVVIPKNTCIPVNKTKSCVTSQDNQTIALIKVYEGERTRASDNNLLGSFTLSGIPPSPRCFPFSVVCFYINENGILTVSAKNNASGTSNKITITNHKERLSIEDIKKLIQEAENYHIEDKKFLRKANAVNALDDYIYKMTNTLKKKDINLKLSSQEIQLIEDAIAVAKNLLEENNKLVEIEVLEDHLEGLESRMKHIIAKTI* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3733 539 SUPERFAMILY Actin-like ATPase domain 9 193 IPR043129 -
Psa1g3733 539 Gene3D - 73 128 - -
Psa1g3733 539 SUPERFAMILY Actin-like ATPase domain 198 318 IPR043129 -
Psa1g3733 539 Gene3D - 10 193 - -
Psa1g3733 539 PANTHER HEAT SHOCK PROTEIN 70KDA 317 537 IPR013126 GO:0005524|GO:0140662
Psa1g3733 539 PANTHER HEAT SHOCK PROTEIN 70KDA 4 316 IPR013126 GO:0005524|GO:0140662
Psa1g3733 539 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 316 - -
Psa1g3733 539 PANTHER HEAT SHOCK 70 KDA PROTEIN 317 537 - -
Psa1g3733 539 Coils Coil 517 537 - -
Psa1g3733 539 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Psa1g3733 539 Gene3D Actin; Chain A, domain 4 237 316 - -
Psa1g3733 539 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Psa1g3733 539 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 465 538 IPR029048 -
Psa1g3733 539 Pfam Hsp70 protein 9 316 IPR013126 GO:0005524|GO:0140662
Psa1g3733 539 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 324 466 IPR029047 -
Psa1g3733 539 PRINTS 70kDa heat shock protein signature 8 21 - -
Psa1g3733 539 PRINTS 70kDa heat shock protein signature 38 50 - -
Psa1g3733 539 PRINTS 70kDa heat shock protein signature 60 68 - -
Psa1g3733 539 PRINTS 70kDa heat shock protein signature 148 168 - -
Psa1g3733 539 PRINTS 70kDa heat shock protein signature 211 221 - -
Psa1g3733 539 Gene3D - 467 539 IPR029048 -
Psa1g3733 539 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 314 470 IPR029047 -
Psa1g3733 539 Gene3D - 194 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3733 Psa-Chr1 313943060 313945063 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3733 1 537 Calmodulin-binding Proteins AT5G02500 53.519 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3733 K03283 - egt:105952709 570.081