Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3715 ATGGCAACAACAGAGACAGCTTCTGCTGCGCTTGGTCCTCGATATGCACCGGATGATCCCACCCTTCCGAAACCGTGGTTGGGGTTGATTGATGGAGGTACTGGTACGTTGTACTATTGGAATCCTGAAACCAATGTTACTCAATATGATAAGCCCGGTGCCCCACCTGTGCCTGCTGCTTCTACGCCGGGTTTGGCGCCTATACCGAGTGGGGCGGGGCAGCAACAGATGCTGCAAGGGCAGCCCTCACAACCACATCAGGGAAACCATTTTGCCCAACAGCAACAGAGTCCTCATGTGGCGCAGACTACTCAGCAGCAGCCTTCTCAGGCTGCTCAACCAGTGCAGCAGCAGCAGAACTCACAGCTTGCACAGCCGACGCAACAGCCTGGGTTACACCAAGCTAGACCACAGATGATGCAGCCTCATGGGCAGCAGATGATGCAGTATCAAGGACAGCAATTTCAGCAAATGCATCATCAGATGCCTCCGCAGGTTATTCGTCCACAACAATTTGGGCAAGGTAATCCTCAGGATCATAGTACACATGTTGTGCAACCGCAAGCACCTCAATTCACTCCTCAGAACATGCATTATACGGGGTATCAACAAAACATGGTTACACCCAGGCAACCTAACTCCCAGCAGATTCAGCCAAACATGCTACCATCTGGGCAGTCAACACCCCAGCAGAATCAGCATAACATACATAACCAGCCTTTTGAAAACCAACAAGATTTTAAAACAGCAATACCAAAGGTGGAGGAAACAGAGTTTAAAAATGGAAGCCAAGTTGGTTTCTCGCCGTCACAGTATCAACAAAGGAGTGCCTTGCCTGGTCAGAACAATCCAAATGTTCCTGCTGAAGTAAGTTCTGGTCAAGTGTCTATTGCAGGTGTTAATTCTGGCCAACCACAACAATTCAGAGGGTTTTCAGGCAGCATGCAGCAGCCTGCCCCGACAATGCAGTCACAGCAGGGTGGTTCTGATTTATTTTATCAACATGTTCCTAACTTTCAAAACCAGTTGAGCCCGGGAATGATGCATGGGCATCCTTCTAATGCACATCCTTCTAATGCGCATCCTGCTGCCCAAAAGATGGGACATGAGGACAACGTACACGGTAGAGCTGGAAATGACTATTATTATAATTCTAACAAAGAGATGCCACCAATGGGTCGTCAGCAGTCAGATATGGCCCAAATGCCAATTTCCAGAAATCAGCAGGATATGAGGATTGGCAATTCCCCTTTTCAAAACAATGTCCCTAGTGGAAATGGAAGCGGTATTACTGGGAATGCTATGGGTAACATGTTCACCTCTCCTATTGGAGTACCTTCTGCCCTTTCAAGTAACTCATTTACAAGGCCTCCTTATGGTGGGTCTTCAGATGTTACTGATCTCTCACCAGCTGAAATATACTGTCGGCAACATGAAGTTACAGCGACGGGTGACAACATTCCACCCCCATTCATGACATTTGATTCCACCGGGTTCCCTCCAGAGATACTGCAAGAGGTATGTTCTGCAGGCTTCTTGAATCCAACGCCAATACAAGCTCAAACATGGCCTATTGCCCTACAGGGTAGAGACATAGTGGCGATTGCCAAAACAGGCTCTGGGAAAACACTAGGCTACTTAATGCCGGCCTTCATTCTTCTTAGGCAGCGACGCAATAATTCTCTGAATGGCCCCACCGTCTTGGTTTTGGCTCCAACACGAGAACTTGCAACACAGATCCAAGTGGAGGTCTTCAAATTTGCACGGTCTTCAAGAGTATCTTGCACGTGCTTGTATGGTGGAGCATCTAAAATTATTCAGCTGAAAGAGTTAGATCGGGGGGCAGACATTGTTGTTGCCACACCTGGTAGGCTCAATGATATACTTGATATGAAAAAAATTGACTTTAGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCACCACGTAGACAAACTCTCATGTACACTGCAACCTGGCCTAAAGAAGTGAGAAAAATTGCTGGCGATCTTCTTGTTAATCCTGTTCAGGTTAACATTGGAAATGTGGATGAGCTCGCTGCAAACAAATCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAGAGGCGTCTAGAGCAGATCCTCAGATCCCAGGAACGAGGTTCTAAGATCATAATATTTTGTTCCACAAAAAAGTTATGTGATCAGCTTGCCCGGAGTATTGGCAGAAGTTTTGGGGCGGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAGGTCAGTTTAGGAATGGGAAGTCTCCAATTTTGGTTGCTACTGATGTTGCTGCTCGTGGTCTTGATATTAAGGATATAAGGGTTGTGATCAACTATGATTTCCCTAATGGTGTTGAAGACTATGTACACCGAATTGGAAGAACTGGACGGGCAGGTGCTACTGGAGTGGCATATACCTTTTTCTCTGAGCAGGATTGGAAACATGCAGGCGATTTGATCAAAGTTTTGGAGGGTGCTAACCAACACGTGCTTCCAGAGTTAAGGCAGATTGCTTCACGTGGGCCACCAAGCTTTGGAAAGGATAGGGGCGGGATGACTCGGGGTGACCGTGGTGGTCCTAGTGATCGGTACAACATGGATGGTCGCGGACAAGGGCGTGGTCGTGGACGATTTGACAACAGAAGAGATGTTCAGAGAAGTAGAGACAGAAGTTACAGTCGTAGCCCCGAAAGAGTTCGAACATGGGATATTAACAGAAGCAGCAGTAGAAGTAGAAGTAGGAGTAGGAGCTGGTCTCGAGGTCGCAGTAGAAGCCGCAGCTGGTCTCGAGGTCGCAGTCGCAGCTATAGCCGTAGTCCACGACGAAGTCATAGCCGTGACCGAAGCTATAGCCGCAGCCGCAGCCCCAAAAAGAATAATAGGCGTGTCAAGTCAAAATTTTCCGATAAGATTGATATCGTAGCACCTGAAGCAGGAGCTTCTGATCCTAAAATGTTCCCTATATCTGCCAACACCCAAGAGAGTTCTGTTTTGGGAACAGAACATCTGGAGCAGCTACCTGTTGTTGGAAGCACTGGCCCAGATAATCCAGAGGCTGTAGTGGACGTTAGTCATCAATCATCTAATATTTGA 3189 0.4729 MATTETASAALGPRYAPDDPTLPKPWLGLIDGGTGTLYYWNPETNVTQYDKPGAPPVPAASTPGLAPIPSGAGQQQMLQGQPSQPHQGNHFAQQQQSPHVAQTTQQQPSQAAQPVQQQQNSQLAQPTQQPGLHQARPQMMQPHGQQMMQYQGQQFQQMHHQMPPQVIRPQQFGQGNPQDHSTHVVQPQAPQFTPQNMHYTGYQQNMVTPRQPNSQQIQPNMLPSGQSTPQQNQHNIHNQPFENQQDFKTAIPKVEETEFKNGSQVGFSPSQYQQRSALPGQNNPNVPAEVSSGQVSIAGVNSGQPQQFRGFSGSMQQPAPTMQSQQGGSDLFYQHVPNFQNQLSPGMMHGHPSNAHPSNAHPAAQKMGHEDNVHGRAGNDYYYNSNKEMPPMGRQQSDMAQMPISRNQQDMRIGNSPFQNNVPSGNGSGITGNAMGNMFTSPIGVPSALSSNSFTRPPYGGSSDVTDLSPAEIYCRQHEVTATGDNIPPPFMTFDSTGFPPEILQEVCSAGFLNPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQVEVFKFARSSRVSCTCLYGGASKIIQLKELDRGADIVVATPGRLNDILDMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKSITQYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKKLCDQLARSIGRSFGAAAIHGDKSQGERDWVLGQFRNGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIASRGPPSFGKDRGGMTRGDRGGPSDRYNMDGRGQGRGRGRFDNRRDVQRSRDRSYSRSPERVRTWDINRSSSRSRSRSRSWSRGRSRSRSWSRGRSRSYSRSPRRSHSRDRSYSRSRSPKKNNRRVKSKFSDKIDIVAPEAGASDPKMFPISANTQESSVLGTEHLEQLPVVGSTGPDNPEAVVDVSHQSSNI* 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3715 1062 MobiDBLite consensus disorder prediction 55 149 - -
Psa1g3715 1062 MobiDBLite consensus disorder prediction 867 1001 - -
Psa1g3715 1062 SUPERFAMILY WW domain 13 55 IPR036020 GO:0005515
Psa1g3715 1062 MobiDBLite consensus disorder prediction 1 23 - -
Psa1g3715 1062 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 726 870 IPR001650 -
Psa1g3715 1062 CDD WW 35 52 IPR001202 GO:0005515
Psa1g3715 1062 MobiDBLite consensus disorder prediction 882 942 - -
Psa1g3715 1062 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 492 520 IPR014014 GO:0003724
Psa1g3715 1062 MobiDBLite consensus disorder prediction 972 986 - -
Psa1g3715 1062 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Psa1g3715 1062 Gene3D - 702 872 IPR027417 -
Psa1g3715 1062 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 279 954 - -
Psa1g3715 1062 MobiDBLite consensus disorder prediction 945 971 - -
Psa1g3715 1062 SMART ww_5 21 54 IPR001202 GO:0005515
Psa1g3715 1062 Pfam DEAD/DEAH box helicase 516 686 IPR011545 GO:0003676|GO:0005524
Psa1g3715 1062 CDD SF2_C_DEAD 711 840 - -
Psa1g3715 1062 Pfam Helicase conserved C-terminal domain 723 831 IPR001650 -
Psa1g3715 1062 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 523 697 IPR014001 -
Psa1g3715 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 846 IPR027417 -
Psa1g3715 1062 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 279 954 - -
Psa1g3715 1062 SMART ultradead3 511 714 IPR014001 -
Psa1g3715 1062 MobiDBLite consensus disorder prediction 1042 1062 - -
Psa1g3715 1062 MobiDBLite consensus disorder prediction 68 149 - -
Psa1g3715 1062 Gene3D - 468 701 IPR027417 -
Psa1g3715 1062 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 643 651 IPR000629 -
Psa1g3715 1062 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Psa1g3715 1062 SMART helicmild6 751 831 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3715 Psa-Chr1 312770151 312776366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3715 480 851 Eukaryotic Initiation Factors Gene Family AT3G19760 34.584 1.09e-63 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3715 K12823 - gmx:100807830 1298.88