Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3711 ATGGTGTTGGAAACGGAAATCATTTATCAGCAAAGCATTCCTGTGTTGGATGTCAAGTATCACCTTTGCGTTTCTCAAGAAAATGGCGTCAAGGTTGATGTTTCACCTGCTTCCAATGTTGTTCCGATTTTCAATCAACTTAGGGTTTCTTCTGAATCCATTTCGACCGAAACGTCCCTCTTTGGATCGACTGTGACTCACTCTGAGATGATAACTGATACTATTATAGAGGAAGCTGTTGCAAAATTTGCCCCAAATGTTCGTTCTGGTAGCTGTGCTGATATTGGACCGAGGGGATCAATGGATGATGATCACATTCAAGTAGATGATCTAGCTGCCCACCTTGGGTTTGTGTTAAAATATCCTTCACCAAGTGCTTTTTATGCAGTTTTTGACGGACATGGGGGTCCTGATGCAGCAGTGTTTGTTAAGAACAATGCCATGAAATTATTTTTTGAAGATACTACAATGCTTCAATCATATGGCACTGATGCATTTCTAATGAAGAGGTTGGAAGATTCTCATCGGAAAGCTTTTCTAGGTGCCGACCTTGCAATGGCTGATGAACAGAGTATTAGTAGTTCTTGTGGGACAACAGCACTGACCGCCCTTGTACTTGGAAGACATTTGCTGGTTGCTAATGCCGGTGATTGTAGGGCCGTTCTTTGTAAGCGTGGAGTAGCTGTTGACATGTCTCACGACCACAGACCAAGTTATTTACCAGAGCGAAAGAGAGTAGAAGAGTTAGGTGGTTATATTGATGATGGATATCTCAATGGTTATCTTTCTGTAACTCGTGCCCTTGGTGACTGGGACTTGAAATTACCACTTGGGTCTGCCTCGCCTCTTACTGCCGAGCCCGATGTTCAGGTGGTCACATTGACTGAGGAAGACGAGTTCTTAATCATTGGGTGTGATGGCATTTGGGATGTAATGTCAAGCCAGGAAGCAGTTAGTCTTGTCCGTCGCGGATTAAGAAGGCACGATGATCCACAACAATGTGCCAGGGAGCTTGTCAAAGAAGCATTGCGCCTACACACAACAGATAATCTTACTGTAATCGTTATTTGCCTGTCCCCTGTTGAAAGCATTGTTGAATCATGTCCACCTCAAAGGCGAAGATTCAGAGCTTGCTCTCTGTCTGAGGAGGCTCGGAACAAATTGAGGAGCTTGCTTGAAAGTAACTGA 1188 0.4402 MVLETEIIYQQSIPVLDVKYHLCVSQENGVKVDVSPASNVVPIFNQLRVSSESISTETSLFGSTVTHSEMITDTIIEEAVAKFAPNVRSGSCADIGPRGSMDDDHIQVDDLAAHLGFVLKYPSPSAFYAVFDGHGGPDAAVFVKNNAMKLFFEDTTMLQSYGTDAFLMKRLEDSHRKAFLGADLAMADEQSISSSCGTTALTALVLGRHLLVANAGDCRAVLCKRGVAVDMSHDHRPSYLPERKRVEELGGYIDDGYLNGYLSVTRALGDWDLKLPLGSASPLTAEPDVQVVTLTEEDEFLIIGCDGIWDVMSSQEAVSLVRRGLRRHDDPQQCARELVKEALRLHTTDNLTVIVICLSPVESIVESCPPQRRRFRACSLSEEARNKLRSLLESN* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3711 395 Pfam Protein phosphatase 2C 97 350 IPR001932 -
Psa1g3711 395 Gene3D - 71 362 IPR036457 -
Psa1g3711 395 PANTHER PROTEIN PHOSPHATASE 2C 47 382 IPR015655 GO:0004722|GO:0006470
Psa1g3711 395 PANTHER PROTEIN PHOSPHATASE 2C 1 53 IPR015655 GO:0004722|GO:0006470
Psa1g3711 395 SMART PP2C_4 78 356 IPR001932 -
Psa1g3711 395 SMART PP2C_SIG_2 103 358 IPR001932 -
Psa1g3711 395 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 53 - -
Psa1g3711 395 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 47 382 - -
Psa1g3711 395 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Psa1g3711 395 ProSiteProfiles PPM-type phosphatase domain profile. 88 358 IPR001932 -
Psa1g3711 395 SUPERFAMILY PP2C-like 82 360 IPR036457 -
Psa1g3711 395 CDD PP2Cc 87 358 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3711 Psa-Chr1 312192420 312194810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3711 1 392 PP2C-type Phosphatase Gene Family AT1G48040 55.000 9.37e-148 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3711 K14803 - gmx:100798957 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3711 1 312192420 312194810 Psa1g3711 1 312192420 312194810 ECH