Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3705 ATGGAAGTGAAAGCAAGTATAACTAGCAACTCAAACATCACCACCATGCTCCAAAGTGATGATGATGAGATGGATCTTCGAAGAGGTCCATGGACTGTTGATGAAGATCTTGCTCTCATCAATTACATTGCAACTCATGGTGAAGGTCGTTGGAATACCCTTGCTCGTTCAGCTGGACTCAAACGAACTGGGAAGAGCTGTAGATTGAGATGGTTAAATTATCTTCGTCCAGATGTTCGTCGAGGTAACATCACACTCGAAGAACAACTTTTGATTCTCGAGCTTCATAGTCGTTGGGGAAATCGTTGGTCGAAAATTGCTCAATATTTACCTGGAAGAACGGATAATGAGATCAAGAATTATTGGAGAACTCGTGTTCAAAAACACGCAAAACAACTCAAATGTGACGTCAATAGCAAGCAATTCAAAGATGCCATGCGTTATCTTTGGATGCCAAGACTAGTGGAGCGGATCCAAGCCGCCGCGTCCACTTCAGCTGCCCCGACCACCACCACTAACAACGATTCTTCAAATGTTACAACAATGGTCGCTCCGAACAATACGACGTACAACCTTAATAACAATTTTGAGGTTTATAGCTCGAATGCGAACATGATGTTAGCTCCAACCAACATGAACACCAACAATTTATGTAGTTCGCATGTAACACAAAGTTTTACACCGGAAAATAGCAGCAATGGCGCGACGGCCGCGTCGTCCGATTCTTTCGGGACACAAGTTTCGCCTATCTCGGATTTAACTCAAGATTATTACAATGTCCCGGTCGGCGGTAACAACAATATGAACCCTAATTCTGATTATTACCAACAAGCCCAACAATTTGGATTTTCAGATTGCATCACTAGTCCATCAGGTTTGTTCCCTCAAATGGATTTCAATAATTCCATGGAACCAAACACACCTTGGATTCAAGGGGACACATCCGACAATTTCTGGAATGTTGAAAACATGTTGCTCTTTCAACAACTCAATGACAACATGTGA 1005 0.4249 MEVKASITSNSNITTMLQSDDDEMDLRRGPWTVDEDLALINYIATHGEGRWNTLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAASTSAAPTTTTNNDSSNVTTMVAPNNTTYNLNNNFEVYSSNANMMLAPTNMNTNNLCSSHVTQSFTPENSSNGATAASSDSFGTQVSPISDLTQDYYNVPVGGNNNMNPNSDYYQQAQQFGFSDCITSPSGLFPQMDFNNSMEPNTPWIQGDTSDNFWNVENMLLFQQLNDNM* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3705 334 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Psa1g3705 334 PANTHER MYB TRANSCRIPTION FACTOR 9 331 - -
Psa1g3705 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 79 IPR017930 -
Psa1g3705 334 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 9 331 IPR044676 GO:0003700|GO:0006355|GO:0043565
Psa1g3705 334 CDD SANT 30 75 IPR001005 -
Psa1g3705 334 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Psa1g3705 334 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Psa1g3705 334 Gene3D - 85 148 - -
Psa1g3705 334 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Psa1g3705 334 Gene3D - 25 81 - -
Psa1g3705 334 SUPERFAMILY Homeodomain-like 25 122 IPR009057 -
Psa1g3705 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 130 IPR017930 -
Psa1g3705 334 SMART sant 80 128 IPR001005 -
Psa1g3705 334 SMART sant 27 77 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3705 Psa-Chr1 311713809 311716053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3705 21 321 MYB Transcription Factor Family AT3G06490 55.000 1.67e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa1g3705 Myb_DNA-binding 8.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3705 K09422 - gmx:100805341 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3705 1 311713809 311716053 Psa1g3705 1 311713809 311716053 ECH