Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3691 ATGAGGGATATGGCTTTGCAGAAGTGTGTTCCTTCCGGTGATGCACCTGCTGTTAATTTGAAACATTTGAGGATTTCCAGTAAGGTCCCTGAGAAAACCCATCCTGATGTGGAAAATCAGAATCCTAACATGGATGTGGATGTTGACCTTGGGGAAATTTATTTTCTCATTATGCACTTCCTTTCTGGCGGGCCATGTCATAAAACTTATTTACAGTTTTGGAATGAGCTTCTGGAGAAAGAACTATTGCCTAGAAGGTACCATGCTTGGTATTCAAGAAGTGGGGCATGCAGTGGAGTTGCCCACGATGATGGTCAATCATTCCCTTTAGGTTATAATAAGTTGGTGGAGAGGTACCCTCATATTGAAAAGGATCACTTGGTAAAGCTTTTGAAGCAATTGTTATTAAATACAGCCTCCCTGTCACCAGGCATGAGTACTGGAAAAGCTCCAAATGCAGCTGATGTACCCACTCTTCTGGGAAGCGGATCATTTTCACTGCTGAGCTATGACAAGGATAAAGTGAAAGAAGACGCCAAACCGCCACCTTCTTATATGCGCTGGCCTCATATGAAAGCCAATCAGGTTCATGGGCTTAATTTAAGGGAAATCGGGGGTGGTTTTCCAAGACACCACCGTGGACCATCTATACGTGCTGCATGCTATGCCATTGCAAAACCTTCTACTATGGTACAGAAGATGCAAAATATCAAGAGAGTTAGAGGACACCGTAATGCTGTTTATTGTGCTATATTTGATCGGTCAGGAAGATATGTTATTACTGGTTCAGATGATCGACTTGTAAAAATTTGGTCAATGGAAACTGCTTATAGTTTGGCCAGTTGCCGTGGACACGAAGGCGATATTACTGACTTGGCTGTGAGTTCGAACAATGCTTTAGTTGCGTCTTCATCAAATGATTGTGTTATTCGAGTTTGGCGCCTGCCAGACGGCTTACCAATATCAGTTTTGCGGGGACATACTGGAGCTGTTACAGCCATAGCCTTTAGTCCCAGACCTAGTGCTGTTTACCAACTTTTATCTTCCTCTGACGATGGAACTTGTAGGATATGGGATGCTAGGCATACCCAGTCAAATCCTAGATTATATGTTCCAAAGCCTTTTGATTCTGTTGGAAGGAGTAGTGGCCAATCCTCAAATACAATGCCACAGAGTCATCAAATTTTTTGCTGTGCATTTAATGCTAATGGAACTGTCTTCGTCACTGGTAGCTCTGATAATCTTGCGAGGGTCTGGAATGCTTGTAAACTAAGTATGGAAGATACTGACCAACCAAATCATGAGATAGATGTACTGTCTGGTCATGAAAATGATGTAAACTATGTGCAATTTAGTGGATGTGCAGTAGCATCTCGATTTTCCACAACAGAAACTTGGAAGGAGGAAAACGTTCCCAAATTTAAGAACTCCTGGTTGAATCATGATAACATAGTTACCTGCTCTCGTGATGGTAGTGCTATTATATGGATTCCAAAATCACGAAGGTCACATGGAAAAAGTGGTCGTTGGGCTCGTGCATATCATCTCAAAGTTCCATCTCCACCTATGCCTCCACAACCTCAGAGGGGTGGTCCACGCCAGAGAATTCTACCAACACCACGAGGTGTAAATATGATCGTTTGGAGCCTAGACAACCGCTTTGTTCTTGCAGCTATTATGGATTGCAGAATCTGTGTTTGGAATGCTTCTGATGGCAGCTTAGTGCACTCATTGACTGGACATACTGAATCTACATATGTTCTGGATGTTCATCCTTTTAATCCACGGATAGCAATGAGTGCTGGATATGATGGAAGAACTATTGTATGGGATATATGGGAAGGCTTGCCTATCAGGATATATGAGATATCACGTTTCAAGTTGGTGGATGGAAAATTTTCTCCGGATGGGACGTCAATTATACTATCTGATGATGTTGGTCAACTATATATATTAAGCACGGGCCAAGGTGAGTCCCAGAAAGATGCCAAATATGATCAGTTCTTTCTTGGTGATTATCGACCTCTCATTCAAGACACACATGGTAATGTACTTGACCAGGAAACTCAGCTCATTCCATATCGACGTAACGTGCAAGACTCACTCTGTGATTCAGCAATGATACCATACCCAGAACCTTATCAGAGTGAATTTCAAAAGAGACGACTAGGAGCTTTAGGCATTGAATGGCATCCATCATCGCTAAAGCTTGCCGTTGGTCCTGATTTCAGTTTGGACCCAGAGTATCATATGCTTCCATTGGCTGATTTGGACATGCTTACAGAACCACTACCAGAGTTCATAGATGCTATGGATTGGGTGCCAGAAATTGAAGTGTTTGCTGATGATACTGATTCAGAATATAATCTAACTGAAGATAGTTCTTCCCGGGGTGAGAAAGGATATTCAAGCTCCAGTGCCTCTGGTGATCCTGGTTGCAGCACCAATAACAGTGACGATGAGGACACTCACATGGACTGCATTCGTAGATCGAAAAGGAAGAAACAGAAGACCGGAATTGAGATTATGACTTCATCTGGGAGACGCGTTAAAAGAAGGAATTTGGACGAGTGTGAAGGAAATGTTGTCAGTAGTAGCCGAAATTGGAAGGGAAAAAGTGAAGAAAAAACATCAAGGAGGAAATCTTCTAAATCAAAATCTTCCAGACCTCAAAGAGCTGCTGCACGCAATGCTCTGCATTTATTTTCAAGAATTACAGGCACTCCAATAGAAGGAGAAGAAGATAGTTTGGTTGATGATTCTTCAGACAGTGACTCATCATTGCAAGAGTCTAATATTGACAGTGATGAATCCGGTAGAGCTTCCCCAATTGACCAACGGAATTATTCCAAGGGGAAAGAAGTATTACTGTGTGAATCAGAGGATACAAAATCTCACAAGTTGACTGAGACTCATGTAAACAGGAGGAGGTTGGTCCTCAAATTGCCAATTCGGGATTCATCTAAAACTACACATGAGTTTAAGAACCAGGCTGAGTTGGTTGGCACATCATCAAAAACTGCTCATGAATCTCCAGATTTTAATAAGACCAGAGCAAGTTCTACAGAGCCAGGATATTGTTTTGGCAATGGAAGTTCCTCTTCAATTGATAGAATAGATCAAGTAAAACTTGACCAGGTATCAACAGGCATAGATTTACTGGAGAAAATTAGATGGGGGGAGGTTAGGGCTCGTTCATCTAAACCTCTCAGAGCAAGAGAAGCTGTGCCACCAGGTGCAAATCCCAACTCTGTCAGACTTCCTAACCATCTCAATGAAAAAGAAAATGTTAGTACTGGGCACGAGAAAGAGGACAAGGACTTCAGCAGTACACCAACCCCTGCTTTAGAAATCCAAAATGATAAGGTAGAAAGTTTGCCAGAAATAAATGATGATTGTGCTGGTACTACCTCCCAGGCTCTTAATCCTACTGAGAATGGAGGACCACTCATATCCTCCAGCAATTACAGGGATCAAGATGAACCAATAGTTTCTGCATGCATGATTCCTCGGGATAATACTCTTGTATCAGTCGGCCAGAATGTGGCTGATCAACTACCTGAGCAAAATATTAGTTTTCCTACTGTTTCAACAAAGCTAAGGTCTAAAAGGGGTGCAAGGAATCCTGAAAGTCCATGTAAACTTGAAACAAAATCTTCAGTGCTAAAGAATAGTGCATCTAGCTGTAATGCTGATAATAACTTGAAAAATGAAGAGCATGTGGTTGTGGTTAAGGATGACAACGATACTAGAGTAACATCTAATCTGAGAGAAAATGGTTGTCAAGAAGTTGATGCTCTGACTAAACAAGTCAGTACTTCACATGATTCAATAGAACCACATTCCAATAGAGATAGAATGTTCAAAGCTGTTTATAGAAGATCAAGATCACATAAGGCTGCGACTAATTTAGCTGATTGTAGTGGCTTGGGAGAGTCCACTTCAAATGGGAGCAACAGTAATTTTAATGTGGCAGTGGACAGTAATGGCCCAAATGAAGCTCTACATACCAATGGTTCCCTAGAGTTGGAACAAAGTACTTGTGTTCTGAATAATGAGCGGAGTAATCTTAAAGTGCAGCAAGGAAATGGATCTAGTATGGTTAGTATTCCTCAGAATGTTTCACCAAATAAAGGAAAACTCTCAGAAGAAGAAAGGGGTTCTTGTTCAAAATTAACTGTTGGTTTGAGGTCCACTAGGAATCGGAGGTCTACTTATAATATCCGTGAGACTAGTCCTGTAAATAGAAGAAAGTCTCTACAATCGGCTGTGAAGGGGTCCTGGTTGCTGTTATCAACACATGAGGAAGGATGTAGATATATTCCTCAACTGGGGGATGAAGTTGTATATCTAAGACAGGGACACCAGGAATATATAGATTATAGCCGTAAAAGAGAGTCAGGACCTTGGGTGTCACTTAAGGGACATCTAAGAGCTGTAGAATATTGTAGAGTTCAAAGCCTTGAGTATTCTCATGTTCCAGGGTCTGGTGATAGCTGCTGCAAAATGACCCTCCAGTTTGTGGATCCAAATTCAAGCGTTGTTGGCAAAACTTTTAAATTAACCCTACCTGAAGTGACTGGTTTCCCTGATTTTCTTGTTGAAAGAACTAGGTTTGATGCTGCTATCCAAAGAAACTGGACACGCAGGGATAAGTGCAGGGTTTGGTGGAAGAATGAGGATAACTCCTCTGGTAATTGGTGGGAGGGTCGGATTCAGTTTGTGAAGGCCAAATCATCTGAATTTCCAGACAGTCCATGGGAGAGATATAGTGTTCGGTACAAGAGCGACCTCTCTGATGAACATTTGCATAGTCCCTGGGAGCTTTTTGACTCTGATACTCAATGGGAACAGCCTCATATTGATAATAACACAAGAAATAAACTGCTATCCGCTCTCACCAAATTACAGCAGTCAAGCAACAAAATTCAGGATCGTTACGGCTTGCATGAATTGGAGAAAATTTCAAATAAGACAAAATTTACAAACAGGTTTCCGGTTCCTCTGCCTATTGAGTTGATACAATTAAGACTGGAGAACAGTTACTACCGAAGTTTGGAGGCACTCAAGCATGATGTCTCAATTCTCATCTCCAATTCCACCTCATTTTTTGAAAAGGATGCAGAAATGACAGCCAAAATCAAACGCCTATCAGAGTGGTTCGCGCGGACATATTCATCTTTATAG 5187 0.4162 MRDMALQKCVPSGDAPAVNLKHLRISSKVPEKTHPDVENQNPNMDVDVDLGEIYFLIMHFLSGGPCHKTYLQFWNELLEKELLPRRYHAWYSRSGACSGVAHDDGQSFPLGYNKLVERYPHIEKDHLVKLLKQLLLNTASLSPGMSTGKAPNAADVPTLLGSGSFSLLSYDKDKVKEDAKPPPSYMRWPHMKANQVHGLNLREIGGGFPRHHRGPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYSLASCRGHEGDITDLAVSSNNALVASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAVYQLLSSSDDGTCRIWDARHTQSNPRLYVPKPFDSVGRSSGQSSNTMPQSHQIFCCAFNANGTVFVTGSSDNLARVWNACKLSMEDTDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSTTETWKEENVPKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWARAYHLKVPSPPMPPQPQRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGLPIRIYEISRFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQLIPYRRNVQDSLCDSAMIPYPEPYQSEFQKRRLGALGIEWHPSSLKLAVGPDFSLDPEYHMLPLADLDMLTEPLPEFIDAMDWVPEIEVFADDTDSEYNLTEDSSSRGEKGYSSSSASGDPGCSTNNSDDEDTHMDCIRRSKRKKQKTGIEIMTSSGRRVKRRNLDECEGNVVSSSRNWKGKSEEKTSRRKSSKSKSSRPQRAAARNALHLFSRITGTPIEGEEDSLVDDSSDSDSSLQESNIDSDESGRASPIDQRNYSKGKEVLLCESEDTKSHKLTETHVNRRRLVLKLPIRDSSKTTHEFKNQAELVGTSSKTAHESPDFNKTRASSTEPGYCFGNGSSSSIDRIDQVKLDQVSTGIDLLEKIRWGEVRARSSKPLRAREAVPPGANPNSVRLPNHLNEKENVSTGHEKEDKDFSSTPTPALEIQNDKVESLPEINDDCAGTTSQALNPTENGGPLISSSNYRDQDEPIVSACMIPRDNTLVSVGQNVADQLPEQNISFPTVSTKLRSKRGARNPESPCKLETKSSVLKNSASSCNADNNLKNEEHVVVVKDDNDTRVTSNLRENGCQEVDALTKQVSTSHDSIEPHSNRDRMFKAVYRRSRSHKAATNLADCSGLGESTSNGSNSNFNVAVDSNGPNEALHTNGSLELEQSTCVLNNERSNLKVQQGNGSSMVSIPQNVSPNKGKLSEEERGSCSKLTVGLRSTRNRRSTYNIRETSPVNRRKSLQSAVKGSWLLLSTHEEGCRYIPQLGDEVVYLRQGHQEYIDYSRKRESGPWVSLKGHLRAVEYCRVQSLEYSHVPGSGDSCCKMTLQFVDPNSSVVGKTFKLTLPEVTGFPDFLVERTRFDAAIQRNWTRRDKCRVWWKNEDNSSGNWWEGRIQFVKAKSSEFPDSPWERYSVRYKSDLSDEHLHSPWELFDSDTQWEQPHIDNNTRNKLLSALTKLQQSSNKIQDRYGLHELEKISNKTKFTNRFPVPLPIELIQLRLENSYYRSLEALKHDVSILISNSTSFFEKDAEMTAKIKRLSEWFARTYSSL* 1729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3691 1728 PANTHER WD REPEAT DOMAIN 9 15 1728 - -
Psa1g3691 1728 SUPERFAMILY Bromodomain 1652 1726 IPR036427 GO:0005515
Psa1g3691 1728 MobiDBLite consensus disorder prediction 795 816 - -
Psa1g3691 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 388 420 IPR001680 GO:0005515
Psa1g3691 1728 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 388 420 - -
Psa1g3691 1728 MobiDBLite consensus disorder prediction 784 948 - -
Psa1g3691 1728 SMART WD40_4 275 314 IPR001680 GO:0005515
Psa1g3691 1728 SMART WD40_4 571 611 IPR001680 GO:0005515
Psa1g3691 1728 SMART WD40_4 382 420 IPR001680 GO:0005515
Psa1g3691 1728 SMART WD40_4 432 497 IPR001680 GO:0005515
Psa1g3691 1728 SMART WD40_4 530 568 IPR001680 GO:0005515
Psa1g3691 1728 SMART WD40_4 233 272 IPR001680 GO:0005515
Psa1g3691 1728 SMART WD40_4 317 359 IPR001680 GO:0005515
Psa1g3691 1728 MobiDBLite consensus disorder prediction 1003 1022 - -
Psa1g3691 1728 MobiDBLite consensus disorder prediction 922 945 - -
Psa1g3691 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 578 612 IPR001680 GO:0005515
Psa1g3691 1728 MobiDBLite consensus disorder prediction 1064 1125 - -
Psa1g3691 1728 Gene3D - 387 459 IPR015943 GO:0005515
Psa1g3691 1728 SUPERFAMILY WD40 repeat-like 232 654 IPR036322 GO:0005515
Psa1g3691 1728 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 240 275 - -
Psa1g3691 1728 Gene3D - 468 669 IPR015943 GO:0005515
Psa1g3691 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 240 281 IPR001680 GO:0005515
Psa1g3691 1728 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 359 - -
Psa1g3691 1728 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 15 1728 - -
Psa1g3691 1728 Pfam Bromodomain 1663 1714 IPR001487 GO:0005515
Psa1g3691 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 323 IPR001680 GO:0005515
Psa1g3691 1728 ProSitePatterns Trp-Asp (WD) repeats signature. 598 612 IPR019775 -
Psa1g3691 1728 MobiDBLite consensus disorder prediction 1095 1110 - -
Psa1g3691 1728 Gene3D - 218 386 IPR015943 GO:0005515
Psa1g3691 1728 Pfam WD domain, G-beta repeat 235 272 IPR001680 GO:0005515
Psa1g3691 1728 Pfam WD domain, G-beta repeat 320 359 IPR001680 GO:0005515
Psa1g3691 1728 Pfam WD domain, G-beta repeat 572 611 IPR001680 GO:0005515
Psa1g3691 1728 Pfam WD domain, G-beta repeat 392 420 IPR001680 GO:0005515
Psa1g3691 1728 Pfam WD domain, G-beta repeat 279 313 IPR001680 GO:0005515
Psa1g3691 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 368 IPR001680 GO:0005515
Psa1g3691 1728 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 315 - -
Psa1g3691 1728 Gene3D - 1623 1726 IPR036427 GO:0005515
Psa1g3691 1728 CDD Bromo_WDR9_I_like 1600 1728 - -
Psa1g3691 1728 CDD WD40 236 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3691 Psa-Chr1 310634928 310659894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3691 208 516 Eukaryotic Initiation Factors Gene Family AT2G46290 23.724 4.25e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3691 K11797 - gmx:100818665 2685.21