Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3688 ATGGAGGAGGAGAAGAGAGAGGCAAACACAAACCCCACCAACTCATCCTCCACCACCACCATGGCATTTTCCGACGAGATTCCGAGCACCACCACCACCAACAACAACGACACATCTTTATTCCCTTTTCAACCTTCAATCTCCACCATCTTTGACACGTTGCCATCTTCCTCGTGTGACCAAAAAGTTTCCTCTTTTGGATTCATGGACTTGTTAGGTTCCCACGATTACAACACAAACAACAACACTTTTTTGTTATCCGATTGGGTTCTTCCTACAACCACCACAGTCATCCAACCTCTTCCCTCGCCGGCGAGCTCCAACGTCCTGGACTCCTCCGAGGTGTTAAACACACCGACATCACCAAACTCAACTTCAATTTCTTCCTCATCTAACGAAGCCACCTTTAACAACAACAACACCATAGAACAACAACAACAACATAGAACTAAAGTTTCAAAAAACGAACATGATGCTGATGCTGATGCTGATGCAGAGGTAGAAGAAGATGGAAATGGAGTCAAAGAAAATGACCAAAATCAAGACAAGACAAAAAAACAGCTAAAAGCAAAAAAGAAGAATCAAAAGAAGGAAAGAGAACCCAGATTTGCATTCATGACAAAGAGTGAAGTTGATAACCTAGACGATGGATATAGATGGCGTAAGTACGGTCAAAAAGCTGTTAAAAACAGTCCTTATCCCAGGAGCTACTATCGTTGTACCACGGCAGCCTGCGGCGTGAAAAAGCGCGTGGAGCGTTCATCCGATGATTCTTCCATTGTCGTCACTACATACGAGGGTCAACACATACATCCTTCACCTGCCACGTCACGTCCTAGCCTCAGCTTCGTTAACGAACCTACTAGCTTCGGTGCCGGTGCATTTGGTGGCGGTAGTTCAGGTTCACACTCACACTCACACTTTGTTCTACCACACGCTTCATCATTGTCGTACAATAATACTAATCCCACCACCAATTCTACTACTACACCCCCATCACTTGGTTCTAGTGGTAGCTATGTTAACACGTCGTCGTTTGGTGGTTTTGTTCACGACCAAGCGATTATTCAAAGAGGTTTCGGAGCTTCCCACGAGGCTTTGTTAAGAGACAATGGCTTGCTTCAGGATATTATTCAGATGAAAAAAGAGGAGAAAGATTTAATCAAAGAACAACAATAG 1179 0.4419 MEEEKREANTNPTNSSSTTTMAFSDEIPSTTTTNNNDTSLFPFQPSISTIFDTLPSSSCDQKVSSFGFMDLLGSHDYNTNNNTFLLSDWVLPTTTTVIQPLPSPASSNVLDSSEVLNTPTSPNSTSISSSSNEATFNNNNTIEQQQQHRTKVSKNEHDADADADAEVEEDGNGVKENDQNQDKTKKQLKAKKKNQKKEREPRFAFMTKSEVDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAACGVKKRVERSSDDSSIVVTTYEGQHIHPSPATSRPSLSFVNEPTSFGAGAFGGGSSGSHSHSHFVLPHASSLSYNNTNPTTNSTTTPPSLGSSGSYVNTSSFGGFVHDQAIIQRGFGASHEALLRDNGLLQDIIQMKKEEKDLIKEQQ* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3688 392 MobiDBLite consensus disorder prediction 168 185 - -
Psa1g3688 392 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 63 380 - -
Psa1g3688 392 Pfam WRKY DNA -binding domain 215 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa1g3688 392 Gene3D WRKY domain 199 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa1g3688 392 MobiDBLite consensus disorder prediction 10 38 - -
Psa1g3688 392 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 63 380 IPR044810 GO:0003700
Psa1g3688 392 MobiDBLite consensus disorder prediction 1 38 - -
Psa1g3688 392 SMART WRKY_cls 214 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa1g3688 392 SUPERFAMILY WRKY DNA-binding domain 206 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa1g3688 392 ProSiteProfiles WRKY domain profile. 209 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa1g3688 392 MobiDBLite consensus disorder prediction 143 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3688 Psa-Chr1 310519245 310522209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3688 184 384 WRKY Transcription Factor Family AT2G47260 50.000 6.97e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa1g3688 WRKY 1.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3688 - - mtr:MTR_2g033820 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3688 1 310519245 310522209 Psa1g3688 1 310519245 310522209 ECH
Psa1g3688 1 310519245 310522209 Psa4g0520 4 32401543 32403821 PCT