Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3685 ATGTTTCTCGTATCTTTTATTTGCAGTGATATTCCTCAAACACTGCAACTCTCAAAACCCTCAAAAATGAAAACTTTCTCCTCAATTCAACCGCTCCAGAATCTCCATTCCGCCGCATTTTTCTCTTCCACTCCCAAAAGGACTCAAGTTCCTTTCTCTGCAAGGGTTTTCTTTTGTCAGGCAAAATCTGGAACAAACGAGTCATTAAACGTTAAATTATTGTCCCCGATGCTATTAGTAGCAGAAAAAGAAGAAGCCAAGGCTGTATTGACCTTGTTTTTGAAGAAACAAGGTTTGAGCAATGCAAATGCAACAAAAATCATCAACAGATCAGATCCTTTTATTGATCACCTTATCTCAAAGCTTCACTCTAAGCATAAAACTTGGTACCTTTCAGGGAGAGAGCTTACAACTCTTGAAATCAGGGATGCACTTATCTCTTATCTTGAATCGCTTTTCGAAGAGCACGGACATATTCTAGTGGATGTAGTGGAAAACTATCCAAACCCACCTGTTAAGGATAAGTCAGCCGAGCCGATTCCCCCTCCTAATCCTAGTCCAGCGGTATTGTCCAAGAAACTTAAAGCCGTGTCTCTAGTGAGTGGGCTAGACCCTGCTGCGGGAAATCTCCGTCCTCATTTTGTTTATCTCATGGAACTTGGAATGGAAATTGGCCAGATTAAGACTATTATACGGAGGTACCCAGCTTTCGCGAACTATAGCTTGGATGGTAAAATTAAGCCGGTGGTCGAGTTTTTACTTGAACTTGGAATGCCAAAAGAACAAATTCTTATTATCCTCACGAAAAGGCCCCAGTTATGTGGAATCAGTCTATCTGAAAATCTTAAGCCGACAATGAAATTCTTGGAATCTTTGGGCGTTGACAAGAAACAATGGGCGAAGGTGATCTACCGCTTCCCGGCCTTGCTAACTTATAGCAGGCAAAAGATTAATGAAAGTATAGATTTTCTCCTTGAATTAGGCATCTCCGAAGAGAGCATCGGTAAGATCTTAACTCGCTACCCTAATATTGTTTCTTACAGTGTAGAGGACAATCTCCGGCCAACAGCTATGTACTTTCATTCCTTGGGAGTTGATGTTGGCCTTCTTCTATTCAAGTGTCCACAAAATTTTGGTCTTAGCATTGAGGCTAATATAAAGCCTGTAACGGAATTTTTCTTGGAGAGGGGATACACTTTGGAAGAAATTGGGACTATGATTTCGAGATATGGACCATTGTACACTTTCAGCTTGACTGGGAATTTAATGCCAAAATGGGATTTCTTTTTGACTATGGATTACCCTAAATCTGAGCTGGTTAAGTTCCCTAATTTTTTTGGATACAATTTAGAACGACGGATTAAACCGAGATATGCGCGCTTGAAATGTTCTGGGGTGAGATTATTGCTGAATCAGGTTCTTTCACTATCAAGCAGCAAATTTGAAGATGTTCTTAAAAAGAAAATGAAGAAACTGCAAATTGATTAG 1488 0.4005 MFLVSFICSDIPQTLQLSKPSKMKTFSSIQPLQNLHSAAFFSSTPKRTQVPFSARVFFCQAKSGTNESLNVKLLSPMLLVAEKEEAKAVLTLFLKKQGLSNANATKIINRSDPFIDHLISKLHSKHKTWYLSGRELTTLEIRDALISYLESLFEEHGHILVDVVENYPNPPVKDKSAEPIPPPNPSPAVLSKKLKAVSLVSGLDPAAGNLRPHFVYLMELGMEIGQIKTIIRRYPAFANYSLDGKIKPVVEFLLELGMPKEQILIILTKRPQLCGISLSENLKPTMKFLESLGVDKKQWAKVIYRFPALLTYSRQKINESIDFLLELGISEESIGKILTRYPNIVSYSVEDNLRPTAMYFHSLGVDVGLLLFKCPQNFGLSIEANIKPVTEFFLERGYTLEEIGTMISRYGPLYTFSLTGNLMPKWDFFLTMDYPKSELVKFPNFFGYNLERRIKPRYARLKCSGVRLLLNQVLSLSSSKFEDVLKKKMKKLQID* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3685 495 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 44 493 - -
Psa1g3685 495 Pfam mTERF 315 482 IPR003690 GO:0003690|GO:0006355
Psa1g3685 495 Pfam mTERF 72 325 IPR003690 GO:0003690|GO:0006355
Psa1g3685 495 Pfam mTERF 215 393 IPR003690 GO:0003690|GO:0006355
Psa1g3685 495 Gene3D Transcription termination factor 3, mitochondrial 268 491 IPR038538 -
Psa1g3685 495 PANTHER CGI-12 PROTEIN-RELATED 44 493 IPR003690 GO:0003690|GO:0006355
Psa1g3685 495 SMART mt_12 228 259 IPR003690 GO:0003690|GO:0006355
Psa1g3685 495 SMART mt_12 191 223 IPR003690 GO:0003690|GO:0006355
Psa1g3685 495 SMART mt_12 368 399 IPR003690 GO:0003690|GO:0006355
Psa1g3685 495 SMART mt_12 300 330 IPR003690 GO:0003690|GO:0006355
Psa1g3685 495 SMART mt_12 335 366 IPR003690 GO:0003690|GO:0006355
Psa1g3685 495 SMART mt_12 436 467 IPR003690 GO:0003690|GO:0006355
Psa1g3685 495 SMART mt_12 404 435 IPR003690 GO:0003690|GO:0006355
Psa1g3685 495 SMART mt_12 264 295 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3685 Psa-Chr1 310336381 310339272 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g3685 mTERF 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3685 K15032 K12177 gmx:100781900 714.531