Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3681 ATGGCTTCACCAAATAGAACAAGAGGTGAAGCCAATGCATCATCATCAATATCACACCATCAACTTCATCAACAAGATAACAATAGAAACAATAGCAACAACAATAACAACAGAAATATTAAAAGAGAATCGTTATCAATGAGAAAAGCCATAGCTCAGTACACAGAAGACGCAAGACTCCATGCTGTTTTTGAAAAATCCGGTGACTCTTTCGATTATGCCCAATCCATTCGCGTCACGGCGGCTACTGAATCAGTTCCTGAACAGCAAATCACTGCTTACTTAGCCAAAATCCAACGCGGTGGTTTCATTCAACCTTTCGGTTCAATGATCGCCGTCGACGAAACTTCTTTTCGCGTTCTTGCTTACTCTGAAAACGCACGTGACATGCTTGGTATCGCGCCTCAATCGGTTCCTTCTATGGAAGATGATTCTTCTTCTTCTTCGTTTTTCTCTTTAGGCGTTGATGTTCGTTCTCTTTTTAGTGCTTCCAGTTCTGTACTTCTTGAGAAAGCTTTTTCAGCTCGGGAGATTAGTTTAATGAATCCTATTTGGATCCACTCTCGTTCTACTGGTAAGCCTTTTTATGGAATTCTTCACCGAATTGATATTGGTGTTGTTATTGATTTGGAGCCTGCGAGATCTGAGGATCCAGCGCTTTCGATTGCCGGTGCTGTTCAGTCTCAGAAGCTTGCGGTTCGTGCGATTTCGCAGCTCCAGGCGCTTCCTGGTGGTGATGTCAAGCTTCTTTGTGATGCTGTTGTTGAGAGTGTTAGGGAATTGACTGGTTATGATAGGGTTATGGTTTATAAGTTTCATGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGGTTGATTTAGAGCCTTATATTGGTTTGCATTATCCTGCTACTGATATTCCTCAGGCTTCTAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTAATGCTTCTCCTGTTAGGGTTTTTCAGGATGAGGCGCTTGTTCAGCCTGTTTGTTTGGTTGGGAGTACTCTTCGGGCTCCTCATGGTTGTCATGCTCAGTACATGGCAAATATGGGTTCCATTGCTTCTTTGGCTATGGCTGTTATTATTAATGGGAATGATGAAGACGGTGGTGGGATTGGTGGTGCTGCACGTGGCTCGATGAGGCTTTGGGGTCTTGTTGTTTGTCATCATACTTCTGCTAGGTGTATTCCTTTCCCTCTTAGGTATGCTTGTGAGTTTCTAATGCAGGCTTTTGGGCTTCAGTTGAATATGGAGCTTCAGTTAGCCGTGCAGTCGTTGGAGAAAAGGGTTTTGAAGACACAGACTCTGTTGTGTGATATGTTACTTAGGGATTCTCATACAGGGATTGTTACTCAGAGTCCTAGTATTATGGATTTGGTTAAGTGTGATGGGGCTGCTTTGTATTATCAAGGAAACTACCACCCTTTGGGTGTTACTCCGACCGAGTCTCAGATAAGGGATATCATAGATTGGTTGTTGGCCTTTCATAGTGATTCGACGGGTTTGAGTACTGATAGTTTGGCTGATGCTGGTTATCCTGGGGCTGCTTCTCTTGGGGATGCAGTTTGTGGAATGGCTGTTGCGTATATTACTGAAAAAGACTTTCTTTTCTGGTTCAGATCTCATACGGCTAAAGAAATTAAATGGGGTGGTGCAAAGCATCACCCGGAGGATAAGGATGACGGGCAGAAAATGCATCCTCGTTCTTCTTTCAAGGCCTTTTTAGAAGTGGTGAAGAGCCGTAGTATGCAGTGGGATAATGCAGAAATGGATGCAATTCACTCCTTGCAGCTTATCCTGCGAGACTCGTTTAAGGAAGCTGAGAATAACGATTCAAAGGCTGTCGTGCATACCCATATGGCAGAACTAGAGTTGCAAGGGGTGGATGAACTGAGTTCTGTGGCTAGAGAAATGGTTAGGTTGATAGAAACAGCCACTGCTCCCATATTTGCTGTTGATGTCGATGGTCGCATCAATGGGTGGAATGCAAAGGTTTCTGAATTGACAGGACTTCTGGTAGAGGAGGCTATGGGCAAGTCTTTGGTTCATGATCTCGTGTATAAGGAGTCTCGAGAAACTGTGGACAAGCTTCTTTCTCATGCTTTAAAAGGTGAAGAAGATAAAAATGTTGAGATAAAAATGAAGACTTTTGGCCCGGGGAATCAAAATAAGGCAGTTTTTATAGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTGTGCTTTGTTGGCCAGGATATTACTGGTCAAAAAGTTGTAATGGACAAATTCATTAACATACAAGGTGACTACAAGGCTATTGTACATAGTCCAAATCCATTGATCCCTCCCATTTTTGCATCGGATGACAACACATGTTGCTTAGAGTGGAACAATGCTATGGAAAAGCTCAGCGGCTGGAGCCGTGCAGATGTCATTGGCAAATTGTTAGTGGGAGAGGTTTTTGGTAGTTTCTGTCAGTTGAAGGGTTCGGATGCTATGACAAAATTCATGATTGTTTTGCACAATGCACTTGGTGGACACGACACAGACAAATTCCCATTGTCATTTCTTGACAGACATGGAAAGTATGTGCAGACTTTCTTGACCGCAAATAAGAGGGTTAACATGGATGGTCAGATCATTGGCGCATTTTGCTTTTTACAAATTGTGAGCCCTGAACTTCAACAGGCTTTGACAGTCCAGAGACAACAGGATAGTAGTTCCTTAGCTAGAATGAAGGAGTTAGCTTATATTTGTCAAGAAGTAAAGAATCCCTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGTCTACATGCCTGACTGATGAGCAAAAGCAGCTTCTTGAGACTAGTGTTGCTTGTGAGAAGCAAATGCTGAAGATAGTACGGGACATTGCTCTAGAAAGCATCGAGGATGGGTCCCTGGAGCTTGAAAAGCAGGAATTCTTGCTCGAGAATGTCATAAATGCAGTTGTTAGCCAAGTAATGCTATTGCTAAGAGATAGAAAGTTACAGTTAATTCGTGATATTCCTGAAGAAATCAAGGCATTGGCTGTTTATGGTGATCAGTTGAGGATTCAACAAGTCTTGGCTGATTTCTTAATGAATGTGGTGCGCTATGCACCATCTCCAGATGGTTGGGTAGAGATTCATGTATTTCCAAGAATAAAACAAATTTCAGAGGGGCTCACTCTTCTGCATGCTGAATTTAGGATGGTGTGTCCTGGTGAAGGTCTTCCACCTGAATTGATTCAAGACATGTTCCATAACAGTCGGTGGGTGACTCAAGAAGGCTTAGGGCTGAGCATGAGCAGGAAGATTATAAAGTTAATGAACGGCGAAGTCCAGTATGTAAGGGAGGCAGAACGGTGCTACTTCTTAGTTCTTCTTGAACTACCCGTGACACGGAGAAGCTCTAAAGCTATTAATTAG 3459 0.4282 MASPNRTRGEANASSSISHHQLHQQDNNRNNSNNNNNRNIKRESLSMRKAIAQYTEDARLHAVFEKSGDSFDYAQSIRVTAATESVPEQQITAYLAKIQRGGFIQPFGSMIAVDETSFRVLAYSENARDMLGIAPQSVPSMEDDSSSSSFFSLGVDVRSLFSASSSVLLEKAFSAREISLMNPIWIHSRSTGKPFYGILHRIDIGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQALPGGDVKLLCDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRVDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNASPVRVFQDEALVQPVCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEDGGGIGGAARGSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAVQSLEKRVLKTQTLLCDMLLRDSHTGIVTQSPSIMDLVKCDGAALYYQGNYHPLGVTPTESQIRDIIDWLLAFHSDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQKMHPRSSFKAFLEVVKSRSMQWDNAEMDAIHSLQLILRDSFKEAENNDSKAVVHTHMAELELQGVDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVSELTGLLVEEAMGKSLVHDLVYKESRETVDKLLSHALKGEEDKNVEIKMKTFGPGNQNKAVFIVVNACSSKDYTNNIVGVCFVGQDITGQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNNAMEKLSGWSRADVIGKLLVGEVFGSFCQLKGSDAMTKFMIVLHNALGGHDTDKFPLSFLDRHGKYVQTFLTANKRVNMDGQIIGAFCFLQIVSPELQQALTVQRQQDSSSLARMKELAYICQEVKNPLSGIRFTNSLLESTCLTDEQKQLLETSVACEKQMLKIVRDIALESIEDGSLELEKQEFLLENVINAVVSQVMLLLRDRKLQLIRDIPEEIKALAVYGDQLRIQQVLADFLMNVVRYAPSPDGWVEIHVFPRIKQISEGLTLLHAEFRMVCPGEGLPPELIQDMFHNSRWVTQEGLGLSMSRKIIKLMNGEVQYVREAERCYFLVLLELPVTRRSSKAIN* 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3681 1152 CDD PAS 654 761 IPR000014 -
Psa1g3681 1152 SUPERFAMILY GAF domain-like 226 425 - -
Psa1g3681 1152 MobiDBLite consensus disorder prediction 1 42 - -
Psa1g3681 1152 Gene3D - 981 1148 IPR036890 -
Psa1g3681 1152 Gene3D - 901 980 - -
Psa1g3681 1152 CDD HATPase_Phy-like 1029 1141 IPR044767 -
Psa1g3681 1152 ProSiteProfiles PAS repeat profile. 643 714 IPR000014 -
Psa1g3681 1152 PIRSF Phytochrome_conventional 25 1150 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Psa1g3681 1152 Pfam PAS fold 93 213 IPR013654 GO:0006355
Psa1g3681 1152 ProSitePatterns Phytochrome chromophore attachment site signature. 346 355 IPR013516 -
Psa1g3681 1152 Gene3D PAS domain 638 771 - -
Psa1g3681 1152 MobiDBLite consensus disorder prediction 1 41 - -
Psa1g3681 1152 Pfam Phytochrome region 441 616 IPR013515 GO:0006355|GO:0009584
Psa1g3681 1152 Gene3D PAS domain 97 349 - -
Psa1g3681 1152 SUPERFAMILY PYP-like sensor domain (PAS domain) 650 765 IPR035965 -
Psa1g3681 1152 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 915 975 IPR036097 GO:0000155|GO:0007165
Psa1g3681 1152 Pfam PAS fold 777 896 IPR013767 GO:0006355
Psa1g3681 1152 Pfam PAS fold 646 761 IPR013767 GO:0006355
Psa1g3681 1152 CDD HisKA 918 974 IPR003661 GO:0000155|GO:0007165
Psa1g3681 1152 SUPERFAMILY PYP-like sensor domain (PAS domain) 98 215 IPR035965 -
Psa1g3681 1152 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 993 1142 IPR036890 -
Psa1g3681 1152 TIGRFAM sensory_box: PAS domain S-box protein 650 765 IPR000014 -
Psa1g3681 1152 Gene3D - 227 589 IPR029016 -
Psa1g3681 1152 PANTHER PHYTOCHROME 19 1146 - -
Psa1g3681 1152 Pfam His Kinase A (phospho-acceptor) domain 922 982 IPR003661 GO:0000155|GO:0007165
Psa1g3681 1152 PANTHER TWO-COMPONENT HISTIDINE KINASE 19 1146 - -
Psa1g3681 1152 SUPERFAMILY PYP-like sensor domain (PAS domain) 791 894 IPR035965 -
Psa1g3681 1152 PRINTS Phytochrome signature 161 183 IPR001294 GO:0006355|GO:0009584
Psa1g3681 1152 PRINTS Phytochrome signature 261 280 IPR001294 GO:0006355|GO:0009584
Psa1g3681 1152 PRINTS Phytochrome signature 346 367 IPR001294 GO:0006355|GO:0009584
Psa1g3681 1152 PRINTS Phytochrome signature 458 478 IPR001294 GO:0006355|GO:0009584
Psa1g3681 1152 PRINTS Phytochrome signature 543 562 IPR001294 GO:0006355|GO:0009584
Psa1g3681 1152 PRINTS Phytochrome signature 576 594 IPR001294 GO:0006355|GO:0009584
Psa1g3681 1152 PRINTS Phytochrome signature 646 662 IPR001294 GO:0006355|GO:0009584
Psa1g3681 1152 PRINTS Phytochrome signature 665 680 IPR001294 GO:0006355|GO:0009584
Psa1g3681 1152 PRINTS Phytochrome signature 739 756 IPR001294 GO:0006355|GO:0009584
Psa1g3681 1152 PRINTS Phytochrome signature 759 779 IPR001294 GO:0006355|GO:0009584
Psa1g3681 1152 SMART HKATPase_4 1030 1145 IPR003594 -
Psa1g3681 1152 CDD PAS 788 896 IPR000014 -
Psa1g3681 1152 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 246 418 IPR016132 -
Psa1g3681 1152 ProSiteProfiles Histidine kinase domain profile. 925 1145 IPR005467 -
Psa1g3681 1152 SMART gaf_1 246 438 IPR003018 GO:0005515
Psa1g3681 1152 ProSiteProfiles PAS repeat profile. 777 829 IPR000014 -
Psa1g3681 1152 SMART HisKA_10 918 982 IPR003661 GO:0000155|GO:0007165
Psa1g3681 1152 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1030 1136 IPR003594 -
Psa1g3681 1152 Gene3D - 433 606 IPR043150 -
Psa1g3681 1152 Pfam GAF domain 247 428 IPR003018 GO:0005515
Psa1g3681 1152 SMART pas_2 776 846 IPR000014 -
Psa1g3681 1152 SMART pas_2 645 712 IPR000014 -
Psa1g3681 1152 Gene3D PAS domain 790 900 - -
Psa1g3681 1152 SUPERFAMILY GAF domain-like 436 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3681 Psa-Chr1 310148691 310154132 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3681 7 1143 Histidine Kinase Gene Family AT4G16250 72.028 0.0 1745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3681 K12121 - gmx:100799831 1929.84