Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3668 ATGCTTCAGCCATTGATGAATCTTCTCTCTCCATGTTGGAAGCCGTTCGGGCACGGTGACGATTCTTCAGCAGGCATTGTTGGAAGAGAAGGCAAAGACGGATTGCTTTGGTTTCGTGACATCGGAAGATATGGCTCCGGTGAATTCTCTATGGCTGTTGTTCAGGCCAATCAAATCCTTGAAGATCAGAGTCAGATCGAATCTGGCCCGCTTGGAACCTTCGTCGGCGTTTACGACGGTCACGGTGGACCCGACGCAGCGCGTTACGTTTGCGATCACTTGTTCCGCAATTTTCAAGCGGCATCGAGTGAGTCACAGGGTGTTGTGACGGCTGAGACAATTCAAACCGCTTTTCGTTCGACTGAAGAGGGGTTTACTGCCATGGTTTCTGATTTATGGAATACTCGACCTCAAGTTGCAACTACCGGAACATGTTGTTTGGTTGGAGTGATTTTTCAGCAGACACTTTTTGTGGCTAATCTAGGAGATTCCCGCGTTGTGTTGGGAAAGAAAGTTGGGAATACCGGTGGGGTTGCGGCGATTCAGCTGTCGACGGAACATAATGCGAATCTTGAGGCCGTTAGACATGAACTTAAAGAATTACACCCTCATGATCCTCAGGTTGTTGTTCTCAAGCATGGAGTGTGGAGAGTAAAAGGCATTATTCAGGTTTCTAGATCTATAGGGGACGTATATATGAAACATGCACAGTTTAACCGGGAACCAATTAATCCGAAGTTCAGACTTCCTGAGCCAATGAACATGCCTATCTTGTCTGCTAATCCATCTATTCTTTCTCATCCTCTCCAACCAAATGATTCCTTCCTTATATTTGCGTCAGATGGTTTATGGGAGCACCTGAATAATGATCAAGCAGTCGAGATTGTTCACAGAAGTCCACGAGCGGGTAGTGCCAAGAGACTTATCAAGGCTGCCCTGCAGGAAGCAGCTAGAAAACGTGAAATGCGATACTCAGACCTTCGTTCAATTGACAAGAAAGTTCGACGACATTTTCATGATGATATAACTGTTATTGTTTTATTCTTAAACTCTGACCTTATAACTAGGGGTACAGTTCAAAGCCCGCCGCTGTCAATTCGAAGTGCTCTCAATCACTGA 1119 0.4576 MLQPLMNLLSPCWKPFGHGDDSSAGIVGREGKDGLLWFRDIGRYGSGEFSMAVVQANQILEDQSQIESGPLGTFVGVYDGHGGPDAARYVCDHLFRNFQAASSESQGVVTAETIQTAFRSTEEGFTAMVSDLWNTRPQVATTGTCCLVGVIFQQTLFVANLGDSRVVLGKKVGNTGGVAAIQLSTEHNANLEAVRHELKELHPHDPQVVVLKHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINPKFRLPEPMNMPILSANPSILSHPLQPNDSFLIFASDGLWEHLNNDQAVEIVHRSPRAGSAKRLIKAALQEAARKREMRYSDLRSIDKKVRRHFHDDITVIVLFLNSDLITRGTVQSPPLSIRSALNH* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3668 372 Gene3D - 40 358 IPR036457 -
Psa1g3668 372 ProSitePatterns PPM-type phosphatase domain signature. 74 82 IPR000222 GO:0043169
Psa1g3668 372 ProSiteProfiles PPM-type phosphatase domain profile. 45 349 IPR001932 -
Psa1g3668 372 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 372 - -
Psa1g3668 372 CDD PP2Cc 49 349 IPR001932 -
Psa1g3668 372 SUPERFAMILY PP2C-like 57 350 IPR036457 -
Psa1g3668 372 Pfam Protein phosphatase 2C 71 318 IPR001932 -
Psa1g3668 372 SMART PP2C_4 35 347 IPR001932 -
Psa1g3668 372 PANTHER ALPHABET, ISOFORM E-RELATED 3 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3668 Psa-Chr1 309471482 309478590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3668 1 302 PP2C-type Phosphatase Gene Family AT3G17090 68.590 4.34e-157 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3668 K01102 - gmx:100790813 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3668 1 309471482 309478590 Psa1g3668 1 309471482 309478590 ECH