Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3666 ATGAAACTTCTCATTTTTATCTTGTTTTGTATACCATGTTATGCTCTTGCTTTTGAAGTAAAAACCGTCATTGATTCTCCTATGTTAACCAAAAAGATAGGAACTAATCGAACGATCAAAGTCGATATCAATGGAAATGGAGAGTTTAAATCAGTGCAAGCTGCAATTGATTCAGTTCCAGAAGGAAATTCTAAATGGGTCATCATTCATATTAGAAAAGGAGTATATAGAGAAAAAGTGCATATTCCAAAGACTAAACGTTATATATTCTTGAGAGGAAATGGAAGAGGAAGAACTGCCATTGTTTGGTCTCAAAGTTCTTCTGACAATGTTGAGTCTGCCACCTTCAAAGCTGAAGCCCCTGATTTCATTGCCTTTGGAATTAGCTTCAAGAATGAAGCACCAACAGGAGTTGCCTATACTTCCCAAAATCAATCTGTGGCAGCATTTGTAGCAGCAGACAAAATAGCATTTTACCATTGTGCATTTTTTAGTACACATAACACACTCTTTGATTACAAAGGTAGACATTATTATGAGTCATGTTACATTCAAGGTTCGATTGATTTCATATTTGGTCGCGGCAGAACAATCTTCCAAAGTTGCGAGATATTCGTGGTTGATGATAAGAGGATAACAATCCGCGGATCGATAACAGCTGCGAACAAAGAAACTGAACGTGAAATGAGTGGATTTATATTTATTAAAGGCAAAGTTTATGGCATTGGTGGAGTATACTTAGGAAGGGCTAAAGGTCCTTATTCTAGGGTTATTTTTTCTCATACATATCTCTCAAAAACGGTTGTCCCTGAAGGATGGACAAATTGGAGTTATGATGGTAGCACAGAAAATCTTTACCATGCTGAGCATAAATGCTATGGACCTGGTGCTACAGATGTCGGAAGAGCTCCTTGGTCAAGGCAGCTTACTGATGAAGAAGCTGCTAAATTTATATCTATCAATTATATTGATGGAAAGAATTGGTTGCCGGCGTATCGATAA 1002 0.3723 MKLLIFILFCIPCYALAFEVKTVIDSPMLTKKIGTNRTIKVDINGNGEFKSVQAAIDSVPEGNSKWVIIHIRKGVYREKVHIPKTKRYIFLRGNGRGRTAIVWSQSSSDNVESATFKAEAPDFIAFGISFKNEAPTGVAYTSQNQSVAAFVAADKIAFYHCAFFSTHNTLFDYKGRHYYESCYIQGSIDFIFGRGRTIFQSCEIFVVDDKRITIRGSITAANKETEREMSGFIFIKGKVYGIGGVYLGRAKGPYSRVIFSHTYLSKTVVPEGWTNWSYDGSTENLYHAEHKCYGPGATDVGRAPWSRQLTDEEAAKFISINYIDGKNWLPAYR* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3666 333 Pfam Pectinesterase 40 325 IPR000070 GO:0030599|GO:0042545
Psa1g3666 333 Gene3D - 33 333 IPR012334 -
Psa1g3666 333 PANTHER PECTINESTERASE 67-RELATED 5 332 - -
Psa1g3666 333 SUPERFAMILY Pectin lyase-like 35 331 IPR011050 -
Psa1g3666 333 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 332 - -
Psa1g3666 333 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3666 Psa-Chr1 309416376 309418449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3666 1 329 Carbohydrate Esterase AT5G47500 35.920 8.37e-73 228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3666 1 309416376 309418449 Psa1g3666 1 309416376 309418449 ECH