Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa1g3663 | ATGGAAACTCCAGAAGCAGAAGGAGAGCTTCTGAAGAAGATTGAAAGGCTTGAAGCTGGTCAAGTTCACCTCAAACAAGAAATGTCAAAGCTCAAGCTTTCTCAGCGTAGAAGGTCTCACTCCGTTTCGCCACAACGTTCTAGGTTAGGTGCTTCTGCTTCTTCTTTGTCTGCTGCTGCAAATAACAAAGGCTCTTCTTCACCTCTTCAAAGAGAGAGCCGTAGTAGTAGTAGTAGTACTCATGATCCTCATCATCAAAATGGTGGCAAGTATCTCAATATTTTGCAGTCAATTGGTCATTCTGTTCATATTTTGGATCTTCATTGTCGTATTATATACTGGAACCCTAGTGCTGAAAATCTGTATGGTTATACAGCAGAAGAAGTTCTAGGTCAAGATGGGATTGAAGTGCTTGTGGATTCTAGTGAGTTTCAGTTGGCGAATGATGTATTCAACCGTGTGAAAATGGGGGAAAGTTGGACTGGTCAATTTCCGGTAAAGAATAAGATAGGTGATAGGTTTGTTGCGGTTGCTACGAATACGCCTTTCTATGATGATGATGGGAGTTTGGTTGGTGTTATTTGTGTCTCAAGTGATTCAAGACCTTTCCTTGAAAATTTAGTTCCGTTTTCGGTTGGAAAGAATGAAGAAAAGGATTCGGGTGTTAGTTTTTCTAGAATTGGCATTACTAATAAACTTGGTCTTGATCCTCAGCAGCCACTTCAAAATGCTCTAGCTTCAAAAATATCGAATTTGGCTTCAAAGGTGAGTAACAAAGTCAAGTCTAAAATCCGGACTCGAGAAAATGGTGTTGAGGGAGAAGGAGTGAGCGGAGAAACTGAGCATGGTTTTACAGAGCAGAGGGAGGATGGGGATTCTAGTGGAGCTAGCACGCCCGTGGGAGAGGTGCCAGCATCTCCTTTCGTTGTATCTTCTCACGTCGAAGAGAGATCACCGGGGAAACCTATGAGAAACTCTGGTGATGAGAGTGAAGAAAAACCAATGCACAAAATCATAACTTCTAAGGCGGAAGCATGGATTCAAAAGAAAACTATGTCATGGCCATGGAAAACAAATGATCAGGAAGGATCCGAGTCAAAGAACGTCCGGGTTTCTTGGCCTTGGATGCAGCGCGATCAAGAAAAAGAGCCAGCTAATCAAAAGAATGTGTCTTCTGGATTGAAGCTGGAAAGCCGGGCAAGTGAAAGTTATCAACCCGTTATTAACGAGGCTTCAGGATCCTGGTCATCCTTCAATGCGAACAGCACAAGTAGTACCAGCAGTTGCGGGAGTGGCAGTGGTAGCAGTTCTGCTGCCAATAATAGAGTGGATGTTGACTCCGATTGTTTAGATTACGAAATTTTGTGGGAGGATCTGACAATTGGAGAGTCAATTGGGCAAGGTTCTTGTGGAACCGTATACCATGCTCTGTGGTATGGATCAGATGTTGCGGTCAAGGTTTTCTCAAAGCAAGAATATTCAGCAGATGTAATACAGTCCTTCAGACAAGAGGTGTCTCTGATGAAAAGACTTCGCCATCCAAACATTCTACTCTTTATGGGCGCAGTGACTTCACCTCAGCGTCTATGCATTGTTACAGAGTTTCTCCCACGCGGAAGCTTATTTCGTTTGCTCCAAAGAAACACATCCAAACCCGACTGGAGACGGCGGGTTCACATGGCCTTAGATATTGCACGAGGTGTAAATTATCTTCATCATTGCAATCCTCCTATCATCCACCGAGATTTGAAGACCTCGAATCTTCTTGTTGACAAGAATTGGACTGTGAAGGTTGGTGATTTCGGTCTTTCACGCATCAAACATGAAACCTATCTCACGACTAAAACGGGAAAAGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAACGAACCCTCAAATGAAAAGTCCGACGTATACAGTTTTGGAGTCATATTGTGGGAACTTGCAACAGAAAAAATTCCTTGGGATACTCTCAATGCAATGCAGGTTATTGGAGCTGTGGGGTTTATGAACCATCGGCTAGAAATTCCAGAAGATGTTGATCCACAGTGGACTTCTATAATCGAGAGTTGTTGGCATACTGATCCGGCTAGCCGACCAACATTCCAGGAACTGCGGAAAGGCTTAAAGAGCTGCAAAGACGGTATACGATTCAGTTTCAAGCAGCCAGATCTGGTGGTGGTGAAGTCACTCAAAAGGAATCCTAGCCGAACTAGTGAACCATCTTTCGATTTTTGTCAGTCGTGGCTGCTTGATGCAAAGGATTATTTTGCACATATCTTACAAAAACATTCCTTATGA | 2307 | 0.4348 | METPEAEGELLKKIERLEAGQVHLKQEMSKLKLSQRRRSHSVSPQRSRLGASASSLSAAANNKGSSSPLQRESRSSSSSTHDPHHQNGGKYLNILQSIGHSVHILDLHCRIIYWNPSAENLYGYTAEEVLGQDGIEVLVDSSEFQLANDVFNRVKMGESWTGQFPVKNKIGDRFVAVATNTPFYDDDGSLVGVICVSSDSRPFLENLVPFSVGKNEEKDSGVSFSRIGITNKLGLDPQQPLQNALASKISNLASKVSNKVKSKIRTRENGVEGEGVSGETEHGFTEQREDGDSSGASTPVGEVPASPFVVSSHVEERSPGKPMRNSGDESEEKPMHKIITSKAEAWIQKKTMSWPWKTNDQEGSESKNVRVSWPWMQRDQEKEPANQKNVSSGLKLESRASESYQPVINEASGSWSSFNANSTSSTSSCGSGSGSSSAANNRVDVDSDCLDYEILWEDLTIGESIGQGSCGTVYHALWYGSDVAVKVFSKQEYSADVIQSFRQEVSLMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTSKPDWRRRVHMALDIARGVNYLHHCNPPIIHRDLKTSNLLVDKNWTVKVGDFGLSRIKHETYLTTKTGKGTPQWMAPEVLRNEPSNEKSDVYSFGVILWELATEKIPWDTLNAMQVIGAVGFMNHRLEIPEDVDPQWTSIIESCWHTDPASRPTFQELRKGLKSCKDGIRFSFKQPDLVVVKSLKRNPSRTSEPSFDFCQSWLLDAKDYFAHILQKHSL* | 769 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa1g3663 | 768 | MobiDBLite | consensus disorder prediction | 261 | 289 | - | - | |
| Psa1g3663 | 768 | Gene3D | PAS domain | 100 | 202 | - | - | |
| Psa1g3663 | 768 | Gene3D | Transferase(Phosphotransferase) domain 1 | 537 | 740 | - | - | |
| Psa1g3663 | 768 | Pfam | PAS domain | 103 | 199 | IPR000014 | - | |
| Psa1g3663 | 768 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 26 | 713 | - | - | |
| Psa1g3663 | 768 | MobiDBLite | consensus disorder prediction | 357 | 373 | - | - | |
| Psa1g3663 | 768 | PANTHER | SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED | 26 | 713 | - | - | |
| Psa1g3663 | 768 | PRINTS | Tyrosine kinase catalytic domain signature | 533 | 546 | IPR001245 | GO:0004672|GO:0006468 | |
| Psa1g3663 | 768 | PRINTS | Tyrosine kinase catalytic domain signature | 572 | 590 | IPR001245 | GO:0004672|GO:0006468 | |
| Psa1g3663 | 768 | PRINTS | Tyrosine kinase catalytic domain signature | 619 | 629 | IPR001245 | GO:0004672|GO:0006468 | |
| Psa1g3663 | 768 | PRINTS | Tyrosine kinase catalytic domain signature | 638 | 660 | IPR001245 | GO:0004672|GO:0006468 | |
| Psa1g3663 | 768 | PRINTS | Tyrosine kinase catalytic domain signature | 682 | 704 | IPR001245 | GO:0004672|GO:0006468 | |
| Psa1g3663 | 768 | CDD | PAS | 102 | 199 | IPR000014 | - | |
| Psa1g3663 | 768 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 93 | 196 | IPR035965 | - | |
| Psa1g3663 | 768 | SUPERFAMILY | Protein kinase-like (PK-like) | 448 | 709 | IPR011009 | - | |
| Psa1g3663 | 768 | ProSiteProfiles | Protein kinase domain profile. | 459 | 727 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Psa1g3663 | 768 | ProSiteProfiles | PAS repeat profile. | 87 | 158 | IPR000014 | - | |
| Psa1g3663 | 768 | TIGRFAM | sensory_box: PAS domain S-box protein | 91 | 199 | IPR000014 | - | |
| Psa1g3663 | 768 | MobiDBLite | consensus disorder prediction | 44 | 85 | - | - | |
| Psa1g3663 | 768 | MobiDBLite | consensus disorder prediction | 317 | 335 | - | - | |
| Psa1g3663 | 768 | SMART | pas_2 | 89 | 155 | IPR000014 | - | |
| Psa1g3663 | 768 | SMART | serkin_6 | 459 | 715 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Psa1g3663 | 768 | MobiDBLite | consensus disorder prediction | 357 | 397 | - | - | |
| Psa1g3663 | 768 | Pfam | Protein tyrosine and serine/threonine kinase | 459 | 709 | IPR001245 | GO:0004672|GO:0006468 | |
| Psa1g3663 | 768 | CDD | STKc_MAP3K-like | 465 | 707 | - | - | |
| Psa1g3663 | 768 | MobiDBLite | consensus disorder prediction | 258 | 335 | - | - | |
| Psa1g3663 | 768 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 578 | 590 | IPR008271 | GO:0004672|GO:0006468 | |
| Psa1g3663 | 768 | Gene3D | Phosphorylase Kinase; domain 1 | 452 | 536 | - | - | |
| Psa1g3663 | 768 | MobiDBLite | consensus disorder prediction | 28 | 85 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa1g3663 | Psa-Chr1 | 309359787 | 309364264 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa1g3663 | 1 | 723 | MAP Kinase Kinase Kinase | AT3G06620 | 58.268 | 0.0 | 852 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | TKL_CTR1-DRK-2 | Psa1g3663 | PK_Tyr_Ser-Thr | 4.8e-68 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa1g3663 | - | - | gmx:100815858 | 1003.82 |
Event-related genes