Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3661 ATGATGGCACAAAACTTAACGGGGCAGCTTGTTGGTTCAGAGATACATGGCTTCCACACTTTGAGTGATCTTGATGTTGGGGATACCTTGGAGGAAGCAAAAAGCAGATGGCTTCGTCCTAATGAGATCCATGCCATTCTCAGCAATTACAAATATTTTACTATCCATGTCAAGCCATTGAATTTGCCCAAAAGTGGTACTGTTGTACTATTTGACCGCAAGATGCTTAGGAACTTTCGAAAAGATGGGCACAACTGGAAAAAGAAAAACGATGGGAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAGAGGATCCACGTATATTATGCACATGGCCAAGATTGCCCGAGCTTTGTTCGAAGATGTTATTGGCTGCTTGATAAGAGTCTGGAGCACATAGTCCTTGTTCATTACCGTGAAACACAGGAGTCTCAAGGCTCTCCTATTACACCGGCAAGTTCATTAGGTTGTGGATTGACACAGTCTCAAGGCTCTCCTGTTACACCAGTAAATTCAAATTCGAGCTCTATTTCTGATCCAACTACGTCGTGGATTCCATTAGAAGACTTAGATTCTGGAACCAATAGTGCTTTTACTAATGGACTGGATAGAAATCCAACAGGTAGAAGTCTTGAACAGAAGCTCCATGAGATCAATACACTTGATTGGGATGACCTGGTGGCTTCTCATGTTAATACCACTACTATACCTAATGGAGGAGGAAACGAACCACATTTCTATCAACAAAATCAAATCTTAATGAATGGAAGTGTTATCAATGTTGCTGGTGGTCCTTCTGCAGAAGAATGTGTTAACCCTCAGAAGAATCATGCAATCACTTTGGGCTGTGGTGATTCCGTGGAGGACACTTTAGTCAATGAAGGCTTGCAAAGTCAGAACAGCTTTGGAGTATGGATGAATAATGCCATATCTGATATACCATGTTCTGCAGACGCATCAGCTCTTGAATCATCAATTGCTTCATCTGGTCATGATTCATTTTCATCCCTGCCGATGGACAATAATCAGCAACCTTCACTTTCGGAACAAGTGTTTCATCTCACTGAAGTGGCCCCTGCATGGGCTTCTTCCACTGAAAAAACAAAGGTCCTGGTAACTGGATATTTTCACAATGATTATCAACACTTTGCGAAGTCCAATCTAGTGTGCGTCTGTGGCGAAACAAGTGTTCCTGCAGAAATTGTTCAGGTTGGAGTTTACCGATGCTGGGTAATGCCGCATTCTCCAGGATTCGTAAATCTCTATTTGAGCTTTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTATTTTGCACGACCCTACTTCTTCGATGGAAGAAACATACAACTGGATTGAGTTTCGACTTCAGATGAGGCTTTCTAATTTGCTTTTTACAACGCAAAAGACCCTTGACTTTTTCTCTAGTAAAGTATCACCTACTGCACTCAAAGAGACAAAAAAATTTGCCTCCAAAACAATATTTATTTCCAAAAGTTTGCAACACTTTATGAAGTCGTCCGAGGCAAACACAACTCCATTTCCGCAAGCAAAAAATACCTTTTTTGAAATTGCTTTGAAGAACAAATTAAGGGAATGGCTTTTGGAACGAATTGTACTAGGATGTAAGACTGCGGAGTATGATGCACAAGGGCAAGGTGTGATTCATCTGTGTACACTTTTGGGATATACTTGGGCTATTACATTATTTTCATGGTCAGGCTTGTCGCTCGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCATACAATGGAATGGAGAAAATGGTTGCAACTCTGTTGTCTTGTGGGGCAAGGCCTAACTTGGTGACAGATCCGACTCCACAAATTCCCGGTGGCTGTACTGCTGCTGACCTTGCTTACATGAATGGATATGATGGTTTAGCCGCTTATCTTTCGGAAAAGTGTTTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGTTCACTCGAAACCACCACGACTGATCCAGTAAATCCAGAGAACCTTACCGAGGACCAATTGTACCTAAAGGATACATTGGCAGCTTACCGAACAACAGCTGAAGCAGCAGCGCGCATACAAGCTGCGTTTAGAGAACACTCACTGAAATTGCGTTATAAGTCAGTTCAATTTAGCAGCCCGGAGGAGGAAGCTCGCCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGGAAAACGATGGCAGCCGCTGTTCATATTCAGCATAGATTTCGTACGTGGAAGTTGCGTAGAGAGTTTCTCCACATGCGACGTCAGGCTATAAAAATTCAAGCTGCATTCAGGGGCTTTCAAGTGCGTAGGCAATATCGTAAGATTTTATGGTCTGTTGGAATTCTTGAGAAAGCAATTCTGCGTTGGCGTTTAAAGAGAAAAGGTTTCCGCGGGCTTGAGGTAAATCCTGTCGAAGACATGATAAATGAGAAGCATGAAAGCGATGTAGAAGAAGACTTCTTTAAGACGGGTAGGAAACAAGCAGAAGAACGTGTTGAGAGGTCCGTGGTACGTGTACAAGCAATGTTCCGATCGAAGAAAGCACAACAAGAGTATAGCAGGATGAAGATGGCCCATAGTCAAGCAAAGCTGGAACTTGAATTGGAAGACCTTCTCAATTCTGATGTGGACGTGTTAACAACAAAGACAGCATAG 2742 0.423 MMAQNLTGQLVGSEIHGFHTLSDLDVGDTLEEAKSRWLRPNEIHAILSNYKYFTIHVKPLNLPKSGTVVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDCPSFVRRCYWLLDKSLEHIVLVHYRETQESQGSPITPASSLGCGLTQSQGSPVTPVNSNSSSISDPTTSWIPLEDLDSGTNSAFTNGLDRNPTGRSLEQKLHEINTLDWDDLVASHVNTTTIPNGGGNEPHFYQQNQILMNGSVINVAGGPSAEECVNPQKNHAITLGCGDSVEDTLVNEGLQSQNSFGVWMNNAISDIPCSADASALESSIASSGHDSFSSLPMDNNQQPSLSEQVFHLTEVAPAWASSTEKTKVLVTGYFHNDYQHFAKSNLVCVCGETSVPAEIVQVGVYRCWVMPHSPGFVNLYLSFDGHKPISQVVNFEYRTPILHDPTSSMEETYNWIEFRLQMRLSNLLFTTQKTLDFFSSKVSPTALKETKKFASKTIFISKSLQHFMKSSEANTTPFPQAKNTFFEIALKNKLREWLLERIVLGCKTAEYDAQGQGVIHLCTLLGYTWAITLFSWSGLSLDFRDKFGWTALHWAAYNGMEKMVATLLSCGARPNLVTDPTPQIPGGCTAADLAYMNGYDGLAAYLSEKCLVEQFNDMSLAGNISGSLETTTTDPVNPENLTEDQLYLKDTLAAYRTTAEAAARIQAAFREHSLKLRYKSVQFSSPEEEARQIVAAMKIQHAFRNFETRKTMAAAVHIQHRFRTWKLRREFLHMRRQAIKIQAAFRGFQVRRQYRKILWSVGILEKAILRWRLKRKGFRGLEVNPVEDMINEKHESDVEEDFFKTGRKQAEERVERSVVRVQAMFRSKKAQQEYSRMKMAHSQAKLELELEDLLNSDVDVLTTKTA* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3661 913 ProSiteProfiles Ankyrin repeat region circular profile. 594 622 - -
Psa1g3661 913 MobiDBLite consensus disorder prediction 165 184 - -
Psa1g3661 913 SMART iq_5 757 779 IPR000048 GO:0005515
Psa1g3661 913 SMART iq_5 780 802 IPR000048 GO:0005515
Psa1g3661 913 SMART iq_5 704 726 IPR000048 GO:0005515
Psa1g3661 913 SMART iq_5 860 882 IPR000048 GO:0005515
Psa1g3661 913 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Psa1g3661 913 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Psa1g3661 913 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 166 273 - -
Psa1g3661 913 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 160 - -
Psa1g3661 913 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 277 907 - -
Psa1g3661 913 SMART ANK_2a 633 664 IPR002110 GO:0005515
Psa1g3661 913 SMART ANK_2a 594 623 IPR002110 GO:0005515
Psa1g3661 913 ProSiteProfiles IQ motif profile. 705 734 IPR000048 GO:0005515
Psa1g3661 913 Gene3D Immunoglobulins 352 448 IPR013783 -
Psa1g3661 913 ProSiteProfiles Ankyrin repeat profile. 594 626 IPR002110 GO:0005515
Psa1g3661 913 SUPERFAMILY Ankyrin repeat 529 657 IPR036770 -
Psa1g3661 913 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 16 160 - -
Psa1g3661 913 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 277 907 - -
Psa1g3661 913 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 166 273 - -
Psa1g3661 913 ProSiteProfiles IQ motif profile. 781 805 IPR000048 GO:0005515
Psa1g3661 913 Pfam Ankyrin repeats (3 copies) 536 623 IPR002110 GO:0005515
Psa1g3661 913 Gene3D - 526 662 IPR036770 -
Psa1g3661 913 SUPERFAMILY E set domains 359 445 IPR014756 -
Psa1g3661 913 Pfam IQ calmodulin-binding motif 783 802 IPR000048 GO:0005515
Psa1g3661 913 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Psa1g3661 913 ProSiteProfiles IQ motif profile. 862 890 IPR000048 GO:0005515
Psa1g3661 913 SMART CG_1_2 29 147 IPR005559 GO:0003677
Psa1g3661 913 Gene3D - 757 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3661 Psa-Chr1 309307870 309314238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3661 30 900 CAMTA Transcription Factor Family AT3G16940 55.822 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Psa1g3661 CG-1 2.6e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3661 K21596 - gmx:100819198 1295.41