Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3639 ATGGGGAGAGCTCCTTGTTGTGAGAAAGTAGGGTTAAAGAAAGGAAGATGGACTGCTGAAGAAGATAAGATCTTGACTGATTATATTCAACAAAATGGTGAAGGATCCTGGAGGTTCTTGCCTAAGAAAGCAGGTTTGTTAAGGTGTGGGAAGAGTTGCAGACTAAGATGGATAAACTATTTGAGAGCAGATGTGAAGAGAGGGAACATAGCTCCTCATGAAGAAGAAATCATTGTCAAGTTGCATGCTGTTCTTGGAAATAGGTGGTCTGTGATAGCATCACATTTGCCCGGACGAACCGATAACGAGATAAAGAATTACTGGAACTCTCATTTGAGAAGAAAAATTTACTGCTTCATGAGATCCATTAATGAGTCCTCACCACCACTTGGCATGGCATCCACATCCAAAAAAAGTAAACATGACAAAAATAACAAACCAACCATAGAAGAAGACAATAGCATGGCTTTGACTCATCATCAAAATTCCCTTGATTCAATATCTAAAGAGACAACAACTTTACAATGTTATAATGGACAAGAAGTTGAAGGAATTTCAATGAATAATAATATTCTTCATGGTAACATAAATAATACGGTTGCATCATACCCCATCAAGAATATTGATGATGGTTTGGGACCATATAAATGGCTAGATGATGAAATTATGAAACTTCGTAACATGTTTGAGAATGGTGTTATAGGGAATTATGGTAGCATGCATGAGAATGATGAAAAGGGTAATGAATGTGATTATAGGAAGATGCATGTGGAAATAATGGAAACAAATATGGAAAAGAAAAGTGGAATTTGGGAATCATCGTATAATGGAGAGAATAATAAAGAGTTGTACAATTGTTGTTCATCGATGAATTTTGCTACGGATTTTGAACAGTTGTCTGATTGGGACTTTTGTCATGAAGACAAAATGAAGAGTTCGTTGTGGGGTACAGGCATTGGTGAAATCATGAATGGTTTTTATTGGTAA 987 0.3627 MGRAPCCEKVGLKKGRWTAEEDKILTDYIQQNGEGSWRFLPKKAGLLRCGKSCRLRWINYLRADVKRGNIAPHEEEIIVKLHAVLGNRWSVIASHLPGRTDNEIKNYWNSHLRRKIYCFMRSINESSPPLGMASTSKKSKHDKNNKPTIEEDNSMALTHHQNSLDSISKETTTLQCYNGQEVEGISMNNNILHGNINNTVASYPIKNIDDGLGPYKWLDDEIMKLRNMFENGVIGNYGSMHENDEKGNECDYRKMHVEIMETNMEKKSGIWESSYNGENNKELYNCCSSMNFATDFEQLSDWDFCHEDKMKSSLWGTGIGEIMNGFYW* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3639 328 CDD SANT 72 112 IPR001005 -
Psa1g3639 328 SMART sant 13 63 IPR001005 -
Psa1g3639 328 SMART sant 66 114 IPR001005 -
Psa1g3639 328 CDD SANT 16 61 IPR001005 -
Psa1g3639 328 Gene3D - 13 66 - -
Psa1g3639 328 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 293 - -
Psa1g3639 328 MobiDBLite consensus disorder prediction 129 149 - -
Psa1g3639 328 Gene3D - 70 157 - -
Psa1g3639 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa1g3639 328 PANTHER MYB TRANSCRIPTION FACTOR 2 293 - -
Psa1g3639 328 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa1g3639 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa1g3639 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa1g3639 328 Pfam Myb-like DNA-binding domain 72 112 IPR001005 -
Psa1g3639 328 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa1g3639 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3639 Psa-Chr1 308557918 308560485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3639 1 322 MYB Transcription Factor Family AT5G49330 43.662 3.24e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa1g3639 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3639 K09422 - gmx:100819041 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3639 1 308557918 308560485 Psa1g3639 1 308557918 308560485 ECH