Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3605 ATGTCGGACGGAGCCAGTCTTGTGCTAGAATCATCTGAAAACGGCACAGATTTGTCTCAGGATGATATTGGCACTGTTGAGGAGACACCGGAGGAAACAATTTTGTCAAGACAAACTTCTGTTAACCTTGTTCCTTTTATTGGACAAAGATTTGTCTCTCAAGAAGCTGCTTATGAATTTTATTGCAGTTTTGCTAAACAATTTGGTTTTTCTATTAGACGACACCGCACCCGAGGGAAAGATGGGGTTGGCCGAGGAGTAACAAGGAGGGATTTTACTTGCCATCGTGGTGGGTTTCCCCAAAATAAACATTCTGAAGATGTGGGGAAGGTGCAAAGGAACCGTAAATCGTCTCGCTGTGGTTGCCAAGCGTATCTGCGTATTGTGAAAAGGGCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGAAACATCCACAATCATGAGTTGTTGAAATCCAATGAGGTGCGTCTTCTTCCATCGTACTGTCCGATATCTCCTGATGATAAGAGCCGCATATGCATGTTTGCCAAAGCTGGAATGTCGGTAAGACAAATGTTAAGATTAATGGAGCTAGAGAAGGGCATCAAACTTGGCTGTCTTCCTTTTACAGAGATAGATGTGAGAAACTTGTTGCAGTCCTTCAGAAATGTGGATAAAGATAATGATGCTATTGATCTGATTGCAATGTGTAAGAGATTAAAAGATGAAAATCACAACTTCAAGTATGATTTCAAGATAGATAATAGTAACAGGCTTGAGTACATTGCATGGTCCTACGGCTCATCAATTCAATCATATGAAGTATTTGGAGATGCTGTGGTTTTTGATACGACCTACCGGGTAGAGGCTTATGACATGCTGTTGGGAATTTGGCTTGGAGTCGACAATAATGGAATAATATGTTGCTTTAGTTGTGCACTTCTAAGGGACGAAAATATGCCATCTTTTTCATGGGCTTTAAAGGCTTTCTTGGGCTTCATGAAAGGAAAGGCTCCCCAAACAATACTGACTGATCATAACATGTGGCTGAAAGAAGCTATTGCTGTTGAAATGCCTGAAACTAAACACGCCTTTTGTATATGGCATATTCTCTCCAAATTCTCTGACTGGTTTTCATTACTTCTTGGATCACAATATGATGAGTGGAAAGCTGAGTTTCATCGGCTCTACAATTTGGAAATGGTGGAAGATTTCGAAGAAGGCTGGAGGCAAATGGTTGATAATTATGGACTCCATGCAAATAAACATATTATTAGCTTATACTCGTTAAGGACATTTTGGGCTTTACCATTCTTGAGGCAATACTTCTTTGCAGGATTGACCAGTACAAGTCAGACTGAGTCCGTTAATGTTTTCATCCAACGGTTCTTAAGTGCACAATCTCAACCAGAACGCTTTTTAGAGCAAGTGGCTGATATTGTTGATTTTAATGACCGAGCCGGAGCAAAGCAAAAGATGCAAAGGAAAACACAGAAAGTGTGCCTCAAAACTGGTTCACCTATAGAATCCCATGCTGCTACTATACTTACTCCTTATGCCTTGAGCAAGCTCCAGGAGGAGTTAGTTTCGGCACCACAATATGCATCCCTTATGGTCGACGAAGGTTCTTTCCAGGTCAGACACCACTCTCAGACAGATGGAGGTTGCAAGGTACTTTGGCTTCCTTGTCAAGAGCACATCAGCTGCAGCTGCCATCTGTTCGACTTTTTAGGCATCTTATGTAAACATGTGCTACGTGTCATGTCAACTAATAACTGTTTTCACATCCCGGATCAATATTTACCGCTTCGATGGAGAAACATTGGTTCGTCTTCTTTTAACCATTTTCAGGGTGCAAGTAGCACAGATCAGCCTGAAAGGATACAGTTTTTGGAATCTTTGGTTTCAACCCTTCTCATGGAATCCGTTGAAACCGATGAACGCCTTGATGTTGCTTGTGACCAAGTTTCCTTAGTGATATCGCGTATCAAAACTCTTCCAAGGTCATCACATGCGGTAAATGACATTACATTTAGTTACGCATCAGATTCATTGATCTTACCAGAGGTAGAAGATACCGATGAAATGATTAACGGTTTTACAATTGCAAATCCCCATGATTCTATGGGTTTAGGCAAGTTAAAGGAGAGAAGGGTAAGAGATGGAGTCGATCTCACTAGAAAACGCAGACAGTTTTCAGCGCCATTGTGTGTACAATATGGACATGATGGATCTGATTGCTCGATAATGGCCGATGATAATATTAGTGAAGATGCATTAGGGTATATGTAA 2280 0.4114 MSDGASLVLESSENGTDLSQDDIGTVEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQFGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQNKHSEDVGKVQRNRKSSRCGCQAYLRIVKRADFDVPEWRVTGFRNIHNHELLKSNEVRLLPSYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDKDNDAIDLIAMCKRLKDENHNFKYDFKIDNSNRLEYIAWSYGSSIQSYEVFGDAVVFDTTYRVEAYDMLLGIWLGVDNNGIICCFSCALLRDENMPSFSWALKAFLGFMKGKAPQTILTDHNMWLKEAIAVEMPETKHAFCIWHILSKFSDWFSLLLGSQYDEWKAEFHRLYNLEMVEDFEEGWRQMVDNYGLHANKHIISLYSLRTFWALPFLRQYFFAGLTSTSQTESVNVFIQRFLSAQSQPERFLEQVADIVDFNDRAGAKQKMQRKTQKVCLKTGSPIESHAATILTPYALSKLQEELVSAPQYASLMVDEGSFQVRHHSQTDGGCKVLWLPCQEHISCSCHLFDFLGILCKHVLRVMSTNNCFHIPDQYLPLRWRNIGSSSFNHFQGASSTDQPERIQFLESLVSTLLMESVETDERLDVACDQVSLVISRIKTLPRSSHAVNDITFSYASDSLILPEVEDTDEMINGFTIANPHDSMGLGKLKERRVRDGVDLTRKRRQFSAPLCVQYGHDGSDCSIMADDNISEDALGYM* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3605 759 ProSiteProfiles Zinc finger SWIM-type profile. 540 588 IPR007527 GO:0008270
Psa1g3605 759 SMART 26again6 563 590 IPR006564 GO:0008270
Psa1g3605 759 MobiDBLite consensus disorder prediction 1 25 - -
Psa1g3605 759 Pfam MULE transposase domain 276 368 IPR018289 -
Psa1g3605 759 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 8 739 - -
Psa1g3605 759 Pfam FAR1 DNA-binding domain 59 153 IPR004330 -
Psa1g3605 759 Pfam SWIM zinc finger 562 585 IPR007527 GO:0008270
Psa1g3605 759 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 739 IPR031052 GO:0006355
Psa1g3605 759 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3605 Psa-Chr1 307590239 307595051 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Psa1g3605 FAR1 2e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3605 - - gmx:100778434 1381.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3605 1 307590239 307595051 Psa1g3605 1 307590239 307595051 ECH