Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3600 ATGGCCTCAAATTTTTGTAGTCATCATTGCTTCTTCATCGTCGCAGTTTTGTCAATCTTTGCCATAACTCCATCAACATCTCAGCAGCAAACGTCTGATTCGTGCAACGGAATATTCCTGTCATACACATACACCGGAGGAAAAAAGCTTACACCGAACTTGACAGACTCAGGGTCCCAACCGTCCCGATTTGAGTCGACGCTGACAGTGCTCAACAACGGGCTCCAAGAGCTGAAGTCTTGGAAGGTGTTTGTCGGGTTTCAGCACGGAGAATGGTTGGTGTCTGCGTCAAATGTGGTGCTCGCAGACGGGAGAACCATCCCCGAGGCAGTTGGAAACGGCACCGTTTTAGCAGGGTCATCTGTGACAGATTTGAAGACTGCGGCCGAGACTGCAGGGGACTTGACTCAGATGCAGGTTAAGGTAGATATGGTGGGGACAGTGGTGGGGGTTGCACCACCCGGCGTGCCAATGCCTTCGACCATAAACCTTGCTAATGATGGATTCATTTGTGGTGAACCAAATTTTCAAGGGAACAATGAAACTCATGTATGTTGCACAAGTGATCCCAATTACAAGACAAAAATCATCACAAAAGAAAATGTTCTACCTAGACAGAAGAATGGTGATCTTACCATAATGTATGATGTGATCAAGGCATACAATTCCAATTACTTGGCAGAGGTAACAATCTCAAACCACAACCCTCTAGGCCGTCTGGACAATTGGAAATTAAGCTGGAACTGGACAAATGATGAATTTATCCATACAATGAAAGGTGCTTATCCATCAGTTATAGATTCTTCTAAATGTGTTTTTGGTTCACAAGGTGAATTTTACAAGGAACTTGATTTTGCCAATGTATTGAGTTGTGAAAAAAGACCAACAATAATTGATCTACCTCCAACAAGGTTCAATGATACACAACTTGGTAAAATACCATTTTGTTGTAGGAACGGTACTTTGTTACCACCAAATATGGACCCTAGCATGTCAATTTCAAGGTTCCAAATGCAAGTTTATAAAATGCCGCCATATCTCAATCGGTCAAACCTTACACCGCCACAAAATTGGGGGATTAAAGGTTCTATAATCAACCCTGATTACAAGTGCGGCAGCCCGATTAGGGTTAGTCCTAGTCAATTTCGAGATCCAACAGGTTTACCTTCAAACATATCTTCAATTGCAAGTTGGCAAGTTGTGTGCAACATAACAAAGTCATTGAAAAGTGATTCTCCAAAATGTTGTGTCTCATTTTCAGCTTTTTATAATGACTCAGTTATTCCTTGTAACACATGTGCATGTGGATGTCATGGTAATCAAGAGAGAATATGTAGTGTTAGTAAGCCAGCTATGTGGCTTCCATCAAAAGCACTTCTTGTTCCATTTGAGAATAGAAATGAAATGGCACATGATTGGGCTAGTTTGAAAAAGCTACAAGTTCCTAACCCTATTCCATGTGGTGATAACTGTGGTGTGACCATAAACTGGCATGTAAATACAGATTATAAAAAAGGTTGGACCGCAAGGATCACGATTTTTAACTGGGGTGAGACGAATTTCGCTGATTGGTTTGCAGCGGTTCAAATGGACAAAGGTGCAAAAGGTTTTGAGGAAATGTATTCATTCAATGGAGGCTTGTTAGAGAGATTAAACACTACAATATTCATGCAAGGTAAGAAAGGATTGAACTTTCTTGTAGCAGAAGCAAATGGGTTGAACCCTCGAAAAGATCCGAGGGTTCCGGGGAAACAGCAATCGGTAATCTCATTTAGAAAGGAAAAAAATGATGAAATCAACGTGGTTGGTGGCGATGGTTTTCCTAGTAAAGTTTTCTTCAACGGAGAGGAATGCTCTCTTCCGTTGGTGTTTCCAAGCAATGGTTTGAGGAATGAACTTTCTTTATATACTATTATGATCCTAATATTGTCGTCAATCATTTTGATACAACAATGGTGA 1959 0.4109 MASNFCSHHCFFIVAVLSIFAITPSTSQQQTSDSCNGIFLSYTYTGGKKLTPNLTDSGSQPSRFESTLTVLNNGLQELKSWKVFVGFQHGEWLVSASNVVLADGRTIPEAVGNGTVLAGSSVTDLKTAAETAGDLTQMQVKVDMVGTVVGVAPPGVPMPSTINLANDGFICGEPNFQGNNETHVCCTSDPNYKTKIITKENVLPRQKNGDLTIMYDVIKAYNSNYLAEVTISNHNPLGRLDNWKLSWNWTNDEFIHTMKGAYPSVIDSSKCVFGSQGEFYKELDFANVLSCEKRPTIIDLPPTRFNDTQLGKIPFCCRNGTLLPPNMDPSMSISRFQMQVYKMPPYLNRSNLTPPQNWGIKGSIINPDYKCGSPIRVSPSQFRDPTGLPSNISSIASWQVVCNITKSLKSDSPKCCVSFSAFYNDSVIPCNTCACGCHGNQERICSVSKPAMWLPSKALLVPFENRNEMAHDWASLKKLQVPNPIPCGDNCGVTINWHVNTDYKKGWTARITIFNWGETNFADWFAAVQMDKGAKGFEEMYSFNGGLLERLNTTIFMQGKKGLNFLVAEANGLNPRKDPRVPGKQQSVISFRKEKNDEINVVGGDGFPSKVFFNGEECSLPLVFPSNGLRNELSLYTIMILILSSIILIQQW* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3600 652 Pfam COBRA-like protein 225 405 IPR006918 GO:0010215|GO:0031225
Psa1g3600 652 PANTHER COBRA-LIKE PROTEIN 7 1 650 - -
Psa1g3600 652 PANTHER COBRA-LIKE PROTEIN 7 1 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3600 Psa-Chr1 307375433 307377563 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3600 35 636 COBRA Gene Family AT4G16120 62.768 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3600 - - mtr:MTR_2g034950 1118.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3600 1 307375433 307377563 Psa1g3600 1 307375433 307377563 ECH