Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3599 ATGAAACTCAGCAACGACAACCACTCCATCCCAACCCCATCTTCCACTTCAACTTCATCATCAAGACTCGCCGACCTTGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTACTTGTTGTCGATGATGATCCCACCTGTCTCATGATCCTTGAGAGGATGCTCCGTTTTTGCCTCTACCAAGTTACCAAATGCAAGAGAGCTGAGGTTGCATTATCACTTCTTAGAGAGAATAAAAATGGGTTTGACATTGTTTTAAGCGACGTGCATATGCCTGACATGGATGGGTTCAAGCTTTTGGAACATATTGGATTGGAGATGGATCTTCCGGTTATTATGATGTCGGCGGATGATGGTAAAAATGTGGTAATGAAAGGTGTGAAACATGGTGCTTGTGATTATCTAATCAAGCCGGTGCGAATTGAGGCTTTGAAGAATATTTGGCAGCATGTGGTTAGAAAGAGAAATAATCAGTGGAAAGATATGAGGCAATCTGGTGGTGGGTTAGATGAAGGAGATCGGCAACAAAAGATGTCTGGTGATGGTGATTACTCATCTTCTGCAAATGAAGGTAAAAGCTCGAGGAAGAGGAGGGATGAGGAAGATGAAGCAGATGAGAGAGATGATTGTTCCACGATGAAGAAGCCACGAGTAGTTTGGTCTATTGAGCTGCATCAACAGTTCATGGCTGTTGTGAATCAAGTGGGATTAGACAAAGCTGTTCCTAAAAAGATTATGGAAATGATGAATGTTCCTGGGCTCACTAGAGAAAACGTTGCTAGCCATCTTCAGAAATACCGTTTGTATCTTCGAAGGTTGAGTGGAGTTTCGCAACAGCAGAGTAACTTGAACAACCCCTTCATGAGTTCGCAAGAGTCAATATTTGCGTCAACGTCAATAAATGGAATTGATCTTCAAACTCTTTCACCTGCTGGCCAGCTCTCGAATCAAAGCCTAGCCAAGCTTCAAGCAGCTGGACTAAGATTTGGAGAAGGGCATCTGCAACATATGAACAGCAATAAACCAATGAACTTTCTTCACGGAATCCCTACCAACATGGAGCCAAAGCAGTTTGCCAATTTGCACCAGTCTGTTCAATCGTTTGGCAGCACGAATACACGAGTCAATGCTTCTGCTACACCGAGAAGCCCCTGGTTGATGCAGATGGCTCAGTCTCAACCTAGACGTCAGATGCTAAATGAGAATACCAATTCTCATGCTACAAGGTTTCCGTCATCTTTCGTGCAGCCTACAGGACCAATTGGAGTTTCTAATGGTTTTGTAGGAAATGTGATCGCCGATACAAGCAACATAAATTATGCCTATAATTCAGTTGCACAACGTAACATTGACGTCTCACCATCAAATTTAGGCCATTGCGGGTTTTCCTCTATCCAACATGCTGGACAAAATAGAGATGCTAGCTTGATTGGAAAATCTTTGATCTCCATCGGTGATGGTATGAGTCATGGTAATCTCCAAAATGTTGGTCAACACCTCAATACGCCTCTTGTTGACAACTCATTAAGGGTTAAAAGTGAAAGAGTTCCTGATCCATGCTTTGAGATTAACCCTTTCTCTGAGCAATTCGGCCAAGAGGATCTCATGAGCGCATTTCTGAATCAGCACCAAGGCATTGGTCTCGTCGAAAATGAGTTTGACTTGGATGGATATTCCCTAGACAACATTCCGGTCTATAACAGATCCTGTTAG 1710 0.4357 MKLSNDNHSIPTPSSTSTSSSRLADLVSDQFPAGLRVLVVDDDPTCLMILERMLRFCLYQVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVKHGACDYLIKPVRIEALKNIWQHVVRKRNNQWKDMRQSGGGLDEGDRQQKMSGDGDYSSSANEGKSSRKRRDEEDEADERDDCSTMKKPRVVWSIELHQQFMAVVNQVGLDKAVPKKIMEMMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQSNLNNPFMSSQESIFASTSINGIDLQTLSPAGQLSNQSLAKLQAAGLRFGEGHLQHMNSNKPMNFLHGIPTNMEPKQFANLHQSVQSFGSTNTRVNASATPRSPWLMQMAQSQPRRQMLNENTNSHATRFPSSFVQPTGPIGVSNGFVGNVIADTSNINYAYNSVAQRNIDVSPSNLGHCGFSSIQHAGQNRDASLIGKSLISIGDGMSHGNLQNVGQHLNTPLVDNSLRVKSERVPDPCFEINPFSEQFGQEDLMSAFLNQHQGIGLVENEFDLDGYSLDNIPVYNRSC* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3599 569 SUPERFAMILY CheY-like 34 159 IPR011006 -
Psa1g3599 569 MobiDBLite consensus disorder prediction 189 210 - -
Psa1g3599 569 MobiDBLite consensus disorder prediction 158 210 - -
Psa1g3599 569 Pfam Response regulator receiver domain 37 145 IPR001789 GO:0000160
Psa1g3599 569 Gene3D - 211 273 - -
Psa1g3599 569 Pfam Myb-like DNA-binding domain 216 266 IPR001005 -
Psa1g3599 569 SUPERFAMILY Homeodomain-like 211 271 IPR009057 -
Psa1g3599 569 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 270 IPR017930 -
Psa1g3599 569 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 291 IPR045279 GO:0009736
Psa1g3599 569 PANTHER TWO-COMPONENT RESPONSE REGULATOR 321 432 IPR045279 GO:0009736
Psa1g3599 569 SMART REC_2 35 147 IPR001789 GO:0000160
Psa1g3599 569 CDD REC_typeB_ARR-like 37 151 - -
Psa1g3599 569 MobiDBLite consensus disorder prediction 1 21 - -
Psa1g3599 569 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 214 267 IPR006447 GO:0003677
Psa1g3599 569 PANTHER TWO-COMPONENT RESPONSE REGULATOR 321 432 - -
Psa1g3599 569 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 291 - -
Psa1g3599 569 Gene3D - 35 165 - -
Psa1g3599 569 MobiDBLite consensus disorder prediction 158 177 - -
Psa1g3599 569 ProSiteProfiles Response regulatory domain profile. 36 151 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3599 Psa-Chr1 307372294 307377798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3599 507 564 Response Regulator Gene Family AT3G16857 57.627 7.90e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Psa1g3599 Response_reg 1.9e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3599 - K14491 mtr:MTR_2g034960 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3599 1 307372294 307377798 Psa1g3599 1 307372294 307377798 ECH