Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3589 ATGTGTGGTGGTGCTATCATCTCAGATTTCATTGGTGTCAAGCGTGACCGTGACCTCTGGTTTGAGCTTGATCCTTCTGTTGATCTACTTGGTCTCGGTGCTGTTACTAACACCCCCACTTCCAAAGATTTACCTCCCCTTCACTTTCCGCAAATTTTCTCACCCAAAAGAGTGGTTGCATGTGACACTGCAGAGAAGAAACAAAGCGTGGTGACTGTAGAGAAAGGTAAGAAAAGCACCGGAGGGAAAAGAACCCGTAAGAATGTTTACAGAGGAATCAGGCAGAGGCCATGGGGGAAATGGGCTGCAGAAATAAGGGACCCACAGCAAGGTGTCCGTGTCTGGCTCGGTACTTTCTCGACGGCTGAAGAGGCCGCCAGAGCTTATGATGCTGCCGCGAAGAGAATCCGCGGAGACAAGGCTAAGCTGAATTTCCCAGATGCTCCGGTTGGTTATGCTGCTAAAGCTGTCACCGCTCCTCCAATGAAGAAGCGGTGTGTTAGCTATAGTTCTGATCAAGTCAGTTCTCAGCAGGCTAGCTCTGAGTCTGCGGGGTCTGAGATTGATCAGGAGATGGAAATCAAAAAGAAAATGTCTGATCTTGAATGGATCCTAGGTTTGGAGAATGACTTTCCTCAGGTTCAGGCTCAGACTCAGGCTCAAGTTGTGCCCCAACCTCAGCCTGAGCCTGTACCCGCGCCTGCGCCATTCACTATGCCTGCTGAATGGGACAACAATTTCTTGGACGCTTGGACCTTTGAAGAAATGATTGACCCCATCCATAACCTGATTTTTAACTAG 801 0.4919 MCGGAIISDFIGVKRDRDLWFELDPSVDLLGLGAVTNTPTSKDLPPLHFPQIFSPKRVVACDTAEKKQSVVTVEKGKKSTGGKRTRKNVYRGIRQRPWGKWAAEIRDPQQGVRVWLGTFSTAEEAARAYDAAAKRIRGDKAKLNFPDAPVGYAAKAVTAPPMKKRCVSYSSDQVSSQQASSESAGSEIDQEMEIKKKMSDLEWILGLENDFPQVQAQTQAQVVPQPQPEPVPAPAPFTMPAEWDNNFLDAWTFEEMIDPIHNLIFN* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3589 266 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
Psa1g3589 266 MobiDBLite consensus disorder prediction 169 188 - -
Psa1g3589 266 Gene3D AP2/ERF domain 89 147 IPR036955 GO:0003700|GO:0006355
Psa1g3589 266 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Psa1g3589 266 MobiDBLite consensus disorder prediction 169 187 - -
Psa1g3589 266 CDD AP2 90 148 IPR001471 GO:0003700|GO:0006355
Psa1g3589 266 PANTHER DNA-BINDING DOMAIN 1 179 IPR044808 GO:0003700|GO:0009873
Psa1g3589 266 SUPERFAMILY DNA-binding domain 89 147 IPR016177 GO:0003677
Psa1g3589 266 PANTHER EREBP TRANSCRIPTION FACTOR 1 179 - -
Psa1g3589 266 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
Psa1g3589 266 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Psa1g3589 266 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3589 Psa-Chr1 306836540 306839189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3589 1 222 AP2-EREBP Transcription Factor Family AT3G16770 39.608 2.67e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa1g3589 AP2 4.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3589 K09286 - gmx:100817253 191.815