Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3568 ATGGGTGAAAGTCTACAAAGAAATGAAAGTTTGGATATGATTTTGAATGTAAAGAGAGACGCCGCAGAAAAGTTGGATGAATCAATGGTTGAAGATCGTGTCCCTCTTTTGCAGAAGTTGGTAGCAGAGGTGGTGGGAACATTCTTTTTAATATTTGTGGGATGTGGTTGTGTAGTTGTAAACCTTAACAATGATAATGTGGTGACACTTCCTGGAGTCGCAATTGTTTGGGGACTCGCCGTCGTCGTATTGGTGTATTCTCTTGGTCATATCTCCGGTGCTCATTTCAATCCTGCTGTCACCATTGCTCATGCCTCTAGCAGAAGATTTCCATTGATGCAGGTGCCAACATATATAATTGCTCAACTCCTTGGATCAACACTTGCGAGTGGAGCTCTCAAGCTTATATTCAATGGCAAAGAAAACCAGTTTGTGGGAACACTTCCTTCTGGTTCCGACCTTCAAGCTTTTGTGATTGAGTTTATAATCACTTTCTACCTTATGTTCATCGTTTCTGGAGTTGCCACGGATGATAGAGCGATAAGTGAATTGGCGGGACTTGTAGTTGGATCTACAATTACTTTGAGTGTTTTGTTTGCTGGGCCAATCACAGGAGCATCAATGAATCCTGCGAGAAGTTTGGGGCCATCTATTGTGCACCATGAATATAGAGGAATATGGATATATTTGGTGTCTCCTGTTTTAGGAGCTTTGGCTGGAACATGGACATATAACTTCGTCAAATTTACAAACACACCAGTAGGTGGGCTTACCGAGAGTAATTCATTTCTTAAAGGTTCCAGAAGCCTGTGA 813 0.4194 MGESLQRNESLDMILNVKRDAAEKLDESMVEDRVPLLQKLVAEVVGTFFLIFVGCGCVVVNLNNDNVVTLPGVAIVWGLAVVVLVYSLGHISGAHFNPAVTIAHASSRRFPLMQVPTYIIAQLLGSTLASGALKLIFNGKENQFVGTLPSGSDLQAFVIEFIITFYLMFIVSGVATDDRAISELAGLVVGSTITLSVLFAGPITGASMNPARSLGPSIVHHEYRGIWIYLVSPVLGALAGTWTYNFVKFTNTPVGGLTESNSFLKGSRSL* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3568 270 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g3568 270 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Psa1g3568 270 Gene3D Glycerol uptake facilitator protein. 3 254 IPR023271 -
Psa1g3568 270 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g3568 270 SUPERFAMILY Aquaporin-like 34 253 IPR023271 -
Psa1g3568 270 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 267 - -
Psa1g3568 270 PANTHER AQUAPORIN NIP2-1 1 267 IPR034294 -
Psa1g3568 270 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g3568 270 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g3568 270 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g3568 270 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g3568 270 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g3568 270 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g3568 270 Pfam Major intrinsic protein 34 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3568 Psa-Chr1 306107073 306108722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3568 2 265 Major Intrinsic Protein MIP AT5G37820 52.632 2.63e-94 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3568 K09874 - gmx:100812577 389.423