Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3563 ATGGAAGGAATGCGTGATAACCAGAAGAAAAGGTTTGCAGTTGTTGGTGTCTGTTACATTCTTCTTATCGCTGTGGTCCGAACCGATGCGGTCGGTATAACGCGCGGCGGCTTTGGAGGGCCAGGAGAACAAAATGAAAATAACTCTACCACACAAAAGGATGTTGATAGTCTTTGTAAATCAGACCCCGTAAAATGTAACTCGAAACTAGGAAGTTTGTTTAATGGAACAATGAACATAAAAGATACTATAAAAAAAGCACTCATTGAAGACGCTGGGGAGTTACAGAGACACATAGACAATCCAGTTCTTTATAAGGAATTGGTAAAAGACAAACAGTCGGAAGAAGCTATGCGACTTTGCGACGATGTAATGGATGATGCTGTTGATGGAATTAATAAATCTGTTGGTCACTTAGACACATTAGATTTCAATAAGTTGAGTGAGTTTGTTTTCGATCTTCAAGTTTGGATGACTGCTACACTTACAGATCAACAAACATGTTTGGATGCTTTTGAGAAAGTAGACCCAAAAGCTAGTGAGAAAATGGCTCAGTTTTTGAACACTTCTATGAGTTTAAGTGATACTTCTATTGACATGCTTAATTCTGTTTCCGAAGTACTTAAGGATTTTGGTCAAACTCCAGTTGATCTTCACAGGAGGCTTTTATCGGATGAATCCGAAAATCAGGTTGATCTTCACAGGAGGCTTTTATCCGATGAATCCGAAAATCGGGTTGATAGTTATCCTACATGGGTTAGTGAAGGACAAAGACGGCTTCTTGCTGCTTCAGGTCTTAACCCAGATGCTGTTGTGTCGCAAGACGGTAGTGGGAAGTTTAACAGCGTTACTGAAGCTCTTAAGACTGTTCCGTCAAATAACTCGAAACCTTTTATCATTTATGTTAAGGCTGGTACTTATAAAGGGCCTATTCTTATTCCTCTAAAGACGAATTATGTTACAATTATAGGTGATGGTCCTACGAAAACCATATTCACAGGTAGCCTCAATTTCGCTGATGGCGTCCTAACTTATTACAGTGCAACCCTCGGTGTGAATGGTGACAACTTCGTAGCAAAGGATATAGGCATTGAGAACACAGCAGGACCGATTAAAAAGCAAGCTGTAGCACTGAGAGTTTCAGGAGACATGGCAGTATTCTACAACTGTAAAATAGATGGTTACCAAGACACGCTTTTCGCCCTATCCCTACGGCAATTCTACCGCGATTGCATCATCTCTGGTACAATCGACTTCATCTTCGGCGACCCCTTTGCAGTTTTCCAAAACTGCAAAATTATAGTTAGAAAACCATTACTAGGCCAATCATGTTTAGTAACAGCTGGTGGAAGACTCACAACGAAGACTCAAACTGCACTTGTTTTTCAAAGTTGTCATTTCACGGGTGAACCTGAATTAGCAGCGATGTCACCCAAAATATCTTACCTAGGAAGACCATGGAAACAATACTCCAGAGTTGTGATAATGGACTCAATTATAGATGACATCTTTCTCCCTGAAGGTTTCCAAGCATGGATGGGAGTTAGTTTTGCCCAGACAGCTACTTTTTACGAGTATAACAACAAAGGTCCTGGTGCTGACACGAAAGCAAGAGTGAAATGGCCCAATGTTAAAGTTCTATCTGGTAATGAGGCTTCTGTTTATTACCCTGGTAAATTTCTTCAAGTTTCTGGTACACCTTGGATGACAAGTTCTGGGATACCTTGTTCTCTTGGTCCTATGAGATAA 1749 0.4059 MEGMRDNQKKRFAVVGVCYILLIAVVRTDAVGITRGGFGGPGEQNENNSTTQKDVDSLCKSDPVKCNSKLGSLFNGTMNIKDTIKKALIEDAGELQRHIDNPVLYKELVKDKQSEEAMRLCDDVMDDAVDGINKSVGHLDTLDFNKLSEFVFDLQVWMTATLTDQQTCLDAFEKVDPKASEKMAQFLNTSMSLSDTSIDMLNSVSEVLKDFGQTPVDLHRRLLSDESENQVDLHRRLLSDESENRVDSYPTWVSEGQRRLLAASGLNPDAVVSQDGSGKFNSVTEALKTVPSNNSKPFIIYVKAGTYKGPILIPLKTNYVTIIGDGPTKTIFTGSLNFADGVLTYYSATLGVNGDNFVAKDIGIENTAGPIKKQAVALRVSGDMAVFYNCKIDGYQDTLFALSLRQFYRDCIISGTIDFIFGDPFAVFQNCKIIVRKPLLGQSCLVTAGGRLTTKTQTALVFQSCHFTGEPELAAMSPKISYLGRPWKQYSRVVIMDSIIDDIFLPEGFQAWMGVSFAQTATFYEYNNKGPGADTKARVKWPNVKVLSGNEASVYYPGKFLQVSGTPWMTSSGIPCSLGPMR* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3563 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 203 IPR035513 -
Psa1g3563 582 PANTHER PECTINESTERASE 6 580 - -
Psa1g3563 582 Pfam Plant invertase/pectin methylesterase inhibitor 55 186 IPR006501 GO:0004857
Psa1g3563 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 205 IPR035513 -
Psa1g3563 582 SUPERFAMILY Pectin lyase-like 265 576 IPR011050 -
Psa1g3563 582 Pfam Pectinesterase 269 562 IPR000070 GO:0030599|GO:0042545
Psa1g3563 582 SMART PMEI_2 50 200 IPR006501 GO:0004857
Psa1g3563 582 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Psa1g3563 582 Gene3D - 266 581 IPR012334 -
Psa1g3563 582 PANTHER PECTINESTERASE 6 580 - -
Psa1g3563 582 CDD PMEI-like_3 57 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3563 Psa-Chr1 305958389 305960548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3563 8 575 Carbohydrate Esterase AT5G49180 41.919 5.50e-150 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3563 K01051 - gmx:100784682 604.749