Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3562 ATGAAGAGGTTTTCACTTCTTGGTGTCTCATGCATTCTTCTTGTCGCCGTCGTCGCTGCCGCAGGCGGTGAAGGACAGCAGAATGCTGGCAAACTTTGTGAATCAATGAAGTACCAAGAAACATGCCACAAGAGTCTTGCGACGGCGTCGAGCGAAACCCCTGATGTAAAAGAGCTTCTAAAAGCTGCATTCAATGCAACATCAGTGGAGTTGTTGAAACATATTAACAACTCATCTCTTTCTCAAGAATTGGTGAAGGACAACATGACAAAACAAGCAATGGAGGTTTGCAATGAGGTTTTGCATTACGCTGTTGACGGAATCTCTAAATCGATCGGTAAAATCGACAGCTTTGATTTCAATAAGTTGAATGAATATGCTTATGATCTCAAGGTTTGGTTAACCGGTACACTTTCGCATCAACATACATGTTTGGATGGTTTCGAGAATTCAACTACAAAAGCCGGTGAAACAATGGCTAACATTTTGAATGCTTCTTTGCAACTAACTAGCAATGCTATTGACATGATTAATGTTGCTTCTGGAATAGTTAAGGGTGTCGAAAACACGAATAATGGCAAAAGGAGTCTTTTATCTCTTGAATCGGAGAAACTCGTCGATGGATTTCCTTCATGGGTTAACGAAGGACAAAGACGTCTTCTCGCCGATGAACCTGTTAAGCCAAACGCTGTTGTGGCGCAAGACGGTAGCGGACAGTTTAAGACAGTTGGTGAAGCTCTTAAGACCGTTCCTGCTAATAATGCACAACCTTTTGTCATTCATGTTAAGGAAGGTGTTTATAACGAGAATGTTAATGTCGCTCTTGAACAGATTTTTGTTACGATCATCGGTGATGGTCCTACCAAGACCAAATTCACCGGTAGTCTCAACTTCGTCGATGGTACCGTGGTTTACAACACCGCAACCTTCGGTGTAAACGGTGCAAACTTCATGGCAAAGGATATCGGATTCGAGAACACGGCCGGACCCGACAAACATCAAGCAGTTGCACTCCGAGTAACAGCAGACAAAGCAATCTTCTACAACTGTCAAATGGACGGTTTCCAAGCCACGCTCTTCGCGGAATCCCAGCGCCAGTTCTACCGTGACTGCTCCATCTCTGGCACAATCGACTCTATCTTCGGCGACGCCTTTGGAGTTTTCCAAAACTGCAAACTCGTAGTTAGAAAACCAGCTGAAGAGCAAGAATGTACAGTGACAGCAAGCGGAAGAGTAAAATCCGACAGCGCAAGCGGTCTCATTTTCCAAAGCTGTCATTTCACAGGTGAACCAGAAATAGCATCAATAACACCCAAAATCGCTTACCTCGGAAGACCATGGAAGGCATACGCGAGAGTTGTCATAATGGACTCAACCATAGACGACATTTTCAACCCCGAAGGTTACATGCCATGGATGGGAACCGCTTTCACTGATACATGTACTTTTTATGAGTATAACAATAAAGGTCCTGGTGCTGACACAAAAGGAAGAGTTAAATGGCCCGGTGTTAAAACTATATCCGCAACCGAAGCAGCCAATTTCTACGCTGGAAAATTCTTCGAGATTGCTAATTCAACAGAAAGCGATTCTTGGATTGTGAAATCTGGTGTTCCTTATTCACTCGATCCTTCACATTCTAGCAGTAATGGTAAATCCGAGCCCGGAAGTAGTAGTTCGGAGGCTGGCAGTCACTCTGGAGCTACAAGAATAAAGACATTTTACAGCGGCTTTTTCATAGCAGCTGTCTATATGTTGGCAAATATGTGGATGTAA 1776 0.4375 MKRFSLLGVSCILLVAVVAAAGGEGQQNAGKLCESMKYQETCHKSLATASSETPDVKELLKAAFNATSVELLKHINNSSLSQELVKDNMTKQAMEVCNEVLHYAVDGISKSIGKIDSFDFNKLNEYAYDLKVWLTGTLSHQHTCLDGFENSTTKAGETMANILNASLQLTSNAIDMINVASGIVKGVENTNNGKRSLLSLESEKLVDGFPSWVNEGQRRLLADEPVKPNAVVAQDGSGQFKTVGEALKTVPANNAQPFVIHVKEGVYNENVNVALEQIFVTIIGDGPTKTKFTGSLNFVDGTVVYNTATFGVNGANFMAKDIGFENTAGPDKHQAVALRVTADKAIFYNCQMDGFQATLFAESQRQFYRDCSISGTIDSIFGDAFGVFQNCKLVVRKPAEEQECTVTASGRVKSDSASGLIFQSCHFTGEPEIASITPKIAYLGRPWKAYARVVIMDSTIDDIFNPEGYMPWMGTAFTDTCTFYEYNNKGPGADTKGRVKWPGVKTISATEAANFYAGKFFEIANSTESDSWIVKSGVPYSLDPSHSSSNGKSEPGSSSSEAGSHSGATRIKTFYSGFFIAAVYMLANMWM* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3562 591 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 180 IPR035513 -
Psa1g3562 591 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 179 IPR006501 GO:0004857
Psa1g3562 591 Gene3D - 226 544 IPR012334 -
Psa1g3562 591 Pfam Pectinesterase 229 521 IPR000070 GO:0030599|GO:0042545
Psa1g3562 591 PANTHER PECTINESTERASE 25 546 - -
Psa1g3562 591 MobiDBLite consensus disorder prediction 544 564 - -
Psa1g3562 591 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 180 IPR035513 -
Psa1g3562 591 Pfam Plant invertase/pectin methylesterase inhibitor 31 176 IPR006501 GO:0004857
Psa1g3562 591 ProSitePatterns Pectinesterase signature 1. 254 273 IPR018040 -
Psa1g3562 591 PANTHER PECTINESTERASE 25 546 - -
Psa1g3562 591 CDD PMEI-like_3 32 182 - -
Psa1g3562 591 SUPERFAMILY Pectin lyase-like 226 541 IPR011050 -
Psa1g3562 591 SMART PMEI_2 24 176 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3562 Psa-Chr1 305931283 305933622 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3562 2 540 Carbohydrate Esterase AT5G49180 44.288 9.12e-166 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3562 K01051 - gmx:100784682 733.021