Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3560 ATGGAAGAAGAAGAATATGATTACAAAACCAAATTAGTATTAGATATATGCTCTATTTCAAACTGTTCAATTCGTTGTGTTCATACACTTTTCTCAAATGCACCTTTCGTTGATTGGTATTGCATTCTTGGTGTTGAAGAAAATGATGGGCTAAATACCATTCGTAAGAAATATCATAAACTAGCCTTGCAACTTCATCCAGATAAGAATAAACATCCCAAAGCTGAAATTGCATTCAAGCTTGTCTCTCAGGCGTATACATGTCTATCTGATGCAGCAAAAAGAAAATCTTTCAACATAGAAAGACACAGAAGCTTCTGCATTGAGTGCAACAGAATCCCATATAAACCCAACACTCTCCCTACCAATTCCAATGCTTCAAGTTTCAAGGCAAGGAACATTACCAGCAAATCAATATCTAGTAAAGTTAGAAGAAATATTTTGGACATGAGAGAAAGATTGAAGGAAGAAGCTAAGGTGATAGAGAATTGTCTGAGGACAAAGTCAGTGTCAAAGAAAGAAAGTCCTGTTTTTAATCCATCAAACTACATATACCAAAGTAATCCTCATCCTAGGGGCAATCTTTACAAAAATCCCAACACATTTTGGTGCTTAAAGACAGAAAATGCAGTGCACCGCGATAAGGGAGATGCAAAAGCCTCACCGATTTTCGAGGTCAAGTAG 684 0.3655 MEEEEYDYKTKLVLDICSISNCSIRCVHTLFSNAPFVDWYCILGVEENDGLNTIRKKYHKLALQLHPDKNKHPKAEIAFKLVSQAYTCLSDAAKRKSFNIERHRSFCIECNRIPYKPNTLPTNSNASSFKARNITSKSISSKVRRNILDMRERLKEEAKVIENCLRTKSVSKKESPVFNPSNYIYQSNPHPRGNLYKNPNTFWCLKTENAVHRDKGDAKASPIFEVK* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3560 227 CDD DnaJ 38 91 IPR001623 -
Psa1g3560 227 PRINTS DnaJ domain signature 40 58 IPR001623 -
Psa1g3560 227 PRINTS DnaJ domain signature 58 73 IPR001623 -
Psa1g3560 227 PRINTS DnaJ domain signature 74 94 IPR001623 -
Psa1g3560 227 Gene3D DnaJ domain 37 150 IPR036869 -
Psa1g3560 227 PANTHER BNAC03G44070D PROTEIN 3 226 - -
Psa1g3560 227 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 226 - -
Psa1g3560 227 ProSiteProfiles dnaJ domain profile. 38 102 IPR001623 -
Psa1g3560 227 SUPERFAMILY Chaperone J-domain 30 103 IPR036869 -
Psa1g3560 227 Pfam DnaJ domain 38 99 IPR001623 -
Psa1g3560 227 SMART dnaj_3 37 94 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3560 Psa-Chr1 305799470 305801096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3560 24 106 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.559 1.24e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3560 - - gmx:100778573 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3560 1 305799470 305801096 Psa1g3560 1 305799470 305801096 ECH
Psa4g0576 4 34923731 34925412 Psa1g3560 1 305799470 305801096 PCT