Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3552 ATGGCGACGGAGAAGTTAATGGCCGCTGGTGGCCCGCGCTACGTTCAGATGAAATCGTCTCCGCCAACGTCTCCTCCGTCGGCCGATATCGCGTCAAGTCTGTCGTTTCGACACAGCGCCGTCAGCGACCTGTATCGGATTTTCGATGAATTGCCGAAAGCTACTATCGTCTCCGTCTCTCGTCCTGATCCTAGTGATATCAGCCCTATGCAACTCTCTTACACCATTGAGGTCGAGTATAAACAGTTCAAGTGGGAGCTAGTGAAGAAAGCTCATCAAGTATTTATTTTGCATTTTGCGTTAAAGAAGCGTGTCTTTATTGAGGAAATTCATGAGAAGCAAGAGCAGGTTAAAGAATGGCTTCACAATCTAGGAATTGGAGAATCCACTACTATGGAACAAGATGACGATGAATGTGAGGAAGAAACAGTTCCTTTACAAACTGATGAAAGTGCTAAAAACAGAGATGTTCCATCTAGTGCTGCTCTTCCAATTATACGTCCAGCTTTAGGAAGACAGCATTCTATTGCAGACAGGGCAAAAAGTGCAATGCAAGGGTATCTGAATCACTTTTTGGGAAATATTAGTATTGTTAACTCTCCTGAGGTTTGCAAGTTTTTGGAGGTGTCAATGCTATCTTTTTCACCTGAATATGGTCCTAAGCTGAAGGAGGAATACGTGATGGTGAAGCATCTGCCTAAAATTAAAAAGGATGAAGACTCCCGAAAGTGTTGTTTGTCTGACTGTTTTAATTGTTGTAATGACAATTGGCAAAAGGTGTGGGCCGTACTGAAACCTGGATTCTTGGCATTGCTGGCACATCCTTTTGATAAACAGCCCTTGGACATTATTGTTTTTGATGTACTGCCTGGCTCAGATGCCAACGGGGATGGCCGTTTATCATTAGCGATTGAAATGAAGGAACGGAATCCTTTACGGCATTCGTTCAAGGTGACTTGTGGAATCCGAAGTATTAGAATTAGAAGTAAAAGTAGTAGTAAAGTTAAAGACTGGGTTGCTGCAATCAATGATGCTGGACTCAGACCTCCTGAAGGCTGGTGTCATCCTCATCGCTATGGTTCTTTTGCTCCTCCAAGAAGCTTAAATGAAGATGACAGTCAAGCCCAGTGGTTTGTAGATGGGCAATCAGCATTTGAGGTCATTGCTTCTTCAATCGAAGATGCCAAATCCGAGATATTTATCTGTGGGTGGTGGCTGTGCCCAGAACTGTATCTACGGCGACCTTTCCAAACTCATGCTTCATCAAGGCTTGATAATCTGTTGGAAGCAAAAGCTAGGGAAGGGGTTCAGATTTACATTCTTCTCTACAAAGAGGTGGCTCTTGCTTTGAAAATCAACAGTGTCTATAGCAAGAGAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGGTCACACCATGAAAAACTCGTCATTGTTGATAATCATATTTGCTTCATCGGAGGACTGGATTTATGCTTTGGTCGATACGACTCGCCTGAGCATAAGGTGGGGGATGTTCCTCCACTAATTTGGCCTGGAAAGGACTATTACAACCCAAGAGAATCTGAGCCAAATTCATGGGAAGACACCATGAAAGATGAATTGGAACGTGAAAAATATCCTCGTATGCCTTGGCATGATGTTCATTGTGCCCTTTGGGGACCACCTTGTCGTGATATTGCTAGGCACTTTGTTCAGCGATGGAATTACGCTAAGAGGAACAAAGCTCCATATGAGCAAACAATACCACTACTCATGCCTCAACATCATATGGTTATTCCCCATTACTTGGGAAGCAGTGAGGCACCGATCGAAATTAAGAACACTGTCAATGATAGAGCCCTCAAGAGAGAAGATTCATTTTCCTCATCTTCCCAAGACCAAGATATTCCTCTACTCCTGCCTCAAGAGCCAGGTGGGTTAGATGATCCTGAAGAAAGCCCAAAACCAAATGGGTTAATCTCCTTTCTACATCACCTTGACAAGCCTAGAAGGATCAGCAGTGGCCTTCCTTTCTCATTCAGAAGGACCAAAGTTGCAGCAGTTGGTCCGGATACGCCAATGAAGGGTTTTGTAGATGATCTAGACTCTGTGCATTGTCACGAGGGAACTGCTCATGATAGAGTGGCTCACGTTGATTCACAAAACACAGATCTTGAATGGTGGGAAACACAAGAGCGGGATGATCAGGGAGGTTTTGCAGATGAATCCGGACAGATTGGACCTCGTGCTTCCTGCCGTTGCCAGGTTATTAGGAGCGTAAGTCAGTGGTCGGCTGGAACAAGCCAAACGGAAGAGAGCATCCACAATGCTTATTGCTCTCTCATTGAGAAATCTGAATACTTCATCTACATCGAGAATCAGTTTTTTATCTCAGGTCTTTCTGGAGATGATATGATACGTAATCGTGTGTCAGAAGCTTTATATCGACGGATTATGCGAGCTTATAATGACAAAAAATCTTTCAGGGTTATAGTCGTCATACCGCTCCTTCCTGGATTCCAGGGGGGGCTTGATGATGGTGGTGCAGCATCTGTGAGAGCTATAATGCATTGGCAGTATCGAACAATTTGCAGAGGGCAAAATTCTATCATACATAACCTTTATCAGCTTCTTGGTCCAAGAGTACATGACTACATCTCTTTTTACGGCCTGAGGAATTATGGCAAACTCTCTGATGGTGGTCCTGTGGCAACCAGCCAGGTGTACGTCCACAGTAAAATCATGATTGTTGATGATTGTATAAGTTTGATTGGATCTGCTAATATTAATGATAGGAGCTTACTCGGCTCCCGGGACTCTGAGATTGGTGTAGTCATAGAAGACAAAGAGTTGATTGATTCATATATGGATGGAAAGCCTTGGAAGGCAGGGAAGTTTTCTTTGTCTCTCCGATTATCATTATGGTCTGAACACTTGGGTCTAGCGGCAGGAGAGGTCAGTCAAATAATGGACCCCGTTGTTGAGTCTACATACAAGGATATTTGGATGGCAATAGCAAAGACAAATACTGCAATTTATCAGGATGTGTTTTCCTGTGTACCTAATGATCTGATACACACCAGACTTGCTTTCAGACAAAGCGTGGCTTTATGGAAAGAAAAAATTGGACACACAACCATTGATTTAGGTATAGCTCCAGGAAACTTAGAATCCTATCATGATGGAGGTATCAAGAACACTCATCCCATGGAGAGATTAGCATTAGTAAAGGGTCATCTTGTTTCTTTTCCCTTGGAGTTCATGTCTCAAGAAAGTCTAAGACCTGCTTTTAATGAAGGAGAATACTATGCTGCTCAAGTTTTCCATTGA 3354 0.4326 MATEKLMAAGGPRYVQMKSSPPTSPPSADIASSLSFRHSAVSDLYRIFDELPKATIVSVSRPDPSDISPMQLSYTIEVEYKQFKWELVKKAHQVFILHFALKKRVFIEEIHEKQEQVKEWLHNLGIGESTTMEQDDDECEEETVPLQTDESAKNRDVPSSAALPIIRPALGRQHSIADRAKSAMQGYLNHFLGNISIVNSPEVCKFLEVSMLSFSPEYGPKLKEEYVMVKHLPKIKKDEDSRKCCLSDCFNCCNDNWQKVWAVLKPGFLALLAHPFDKQPLDIIVFDVLPGSDANGDGRLSLAIEMKERNPLRHSFKVTCGIRSIRIRSKSSSKVKDWVAAINDAGLRPPEGWCHPHRYGSFAPPRSLNEDDSQAQWFVDGQSAFEVIASSIEDAKSEIFICGWWLCPELYLRRPFQTHASSRLDNLLEAKAREGVQIYILLYKEVALALKINSVYSKRKLLSIHENVRVLRYPDHFSTGVYLWSHHEKLVIVDNHICFIGGLDLCFGRYDSPEHKVGDVPPLIWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPYEQTIPLLMPQHHMVIPHYLGSSEAPIEIKNTVNDRALKREDSFSSSSQDQDIPLLLPQEPGGLDDPEESPKPNGLISFLHHLDKPRRISSGLPFSFRRTKVAAVGPDTPMKGFVDDLDSVHCHEGTAHDRVAHVDSQNTDLEWWETQERDDQGGFADESGQIGPRASCRCQVIRSVSQWSAGTSQTEESIHNAYCSLIEKSEYFIYIENQFFISGLSGDDMIRNRVSEALYRRIMRAYNDKKSFRVIVVIPLLPGFQGGLDDGGAASVRAIMHWQYRTICRGQNSIIHNLYQLLGPRVHDYISFYGLRNYGKLSDGGPVATSQVYVHSKIMIVDDCISLIGSANINDRSLLGSRDSEIGVVIEDKELIDSYMDGKPWKAGKFSLSLRLSLWSEHLGLAAGEVSQIMDPVVESTYKDIWMAIAKTNTAIYQDVFSCVPNDLIHTRLAFRQSVALWKEKIGHTTIDLGIAPGNLESYHDGGIKNTHPMERLALVKGHLVSFPLEFMSQESLRPAFNEGEYYAAQVFH* 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3552 1117 SMART pld_4 914 941 IPR001736 GO:0003824
Psa1g3552 1117 SMART pld_4 482 509 IPR001736 GO:0003824
Psa1g3552 1117 CDD PLDc_vPLD1_2_yPLD_like_2 774 958 - -
Psa1g3552 1117 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 914 941 IPR001736 GO:0003824
Psa1g3552 1117 CDD PLDc_vPLD1_2_yPLD_like_1 375 520 - -
Psa1g3552 1117 PANTHER PHOSPHOLIPASE 44 1114 - -
Psa1g3552 1117 Pfam PLD-like domain 787 963 IPR025202 -
Psa1g3552 1117 SUPERFAMILY PH domain-like 254 345 - -
Psa1g3552 1117 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 482 509 IPR001736 GO:0003824
Psa1g3552 1117 SUPERFAMILY Phospholipase D/nuclease 755 964 - -
Psa1g3552 1117 Gene3D Endonuclease Chain A 366 605 - -
Psa1g3552 1117 MobiDBLite consensus disorder prediction 131 145 - -
Psa1g3552 1117 SMART PH_update 221 349 IPR001849 -
Psa1g3552 1117 MobiDBLite consensus disorder prediction 1 26 - -
Psa1g3552 1117 PANTHER PHOSPHOLIPASE D 44 1114 IPR015679 -
Psa1g3552 1117 MobiDBLite consensus disorder prediction 131 153 - -
Psa1g3552 1117 CDD PH_PLD 198 345 - -
Psa1g3552 1117 Pfam Phospholipase D Active site motif 482 509 IPR001736 GO:0003824
Psa1g3552 1117 SUPERFAMILY Phospholipase D/nuclease 329 602 - -
Psa1g3552 1117 PIRSF PLD_euk 49 616 IPR016555 GO:0004630|GO:0006654|GO:0048017
Psa1g3552 1117 PIRSF PLD_euk 609 1117 IPR016555 GO:0004630|GO:0006654|GO:0048017
Psa1g3552 1117 Gene3D - 235 346 IPR011993 -
Psa1g3552 1117 Gene3D Endonuclease Chain A 715 973 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3552 Psa-Chr1 305610009 305624858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3552 1 998 Phospholipase D Gene Family (Wang group) AT3G16785 72.084 0.0 1393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3552 K01115 - gmx:100780514 1982.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3552 1 305610009 305624858 Psa1g3552 1 305610009 305624858 ECH