Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3550 ATGGAAAAAACACATGATCATGTTAATGGTGGTCGTAACCAAAAGAAAAGACTTGCATTTCTTGGTATCTCTTCCATTCTTGTTGTTGCAGTGATTGGCACGGTTGCGGTCGGTTTAACACGCAGCGGCGGCTCTGTAGAACAAAATGTAAAAATCTTTACCACACAAAGAGATGCTGAATTGCTTTGTAGATCAGACCCAGATAAATGTAAAACGAGACTCGGTAGAGCATTTAGCAGAGCAGGAAGCGTAAGAGATCGGATAAAAGGTGTGTTCGGTGAAGGGAGAGGAGCGTTAATGAGAAACATAAACAATCCAGATCTTTCTAAAGAATTGGTAAAAGACAACATGACGGGACAAGCCATGCGAATTTGCAATGAAGTGTTGGGTAATGCTGTGGATAAGTTTAACAAATCTGATACTGTATTTGATAGATCTGAATTCAATAGGTTGAGTGACTTTGTTTTCGATCTTCAAGTTTGGATAACTGCTACACTTTCAGATCAAGCAACATGTTTGGATGCTTTTGAGAAAGCAGACACAAAAGCTAGTGAGAGAATGGCTCAGGTTTTAAGCACTTCTATGAAGTTAAGCAATAATGCTATTGACATGCTTAATTCTGCTTCTGGATTAATTCGGGATTTCGGACATGGTCCAAGTAATGTTAATAGGAGGCTTTTATCTCATGAATCGGAAAAACTTGTTGATGGTTATCCTACATGGGTTAGCGAGGGACAACGACGGCTTCTTGCTGATCCAGGTGTTAAGCCAGATGCTGTTGTGGCGCAAGATGGTAGTGGGCAGTTTAAAACTGTTGCCGAAGCTCTTAAGACTGTTCCGCCAAATAATGCAAAACCTTTTGTCATTTATGTTAAGGCGGGTGTTTATAAAGAGGTTGTTATTATTCCTCTAAAGATGGATTATGTTACCATCATCGGCGATGGTCCTACAAAAACCAAATTCACAGGTAGCCTCAACTTCGTTGATGGCGTCCTAACTTACGACAGTGCAACCGTCGGTGTGAATGGTGCAAACTTCGTGGCGAAGGATATAGGCATTGAAAACACAGCAGGACCCACTAAACAGCAAGCTGTGGCACTGAGAGTTTCAGGAGATATGGCAGTATTCTACAACTGTCAAATAGATGCTTACCAAGACACACTCTTCGCCCAATCCCTACGGCAATACTATCGCGATTGTAGCATCTCCGGTACAATTGACTTCATCTTCGGCGACCCCTTTGGAGTTTTCCAAAACTGCAAACTTATAGTTAGAAAACCAGCACTAGGCCAAGCATGTTTAGTAACAGCTGATGGAAGAGAGTCAGCCAGCACTCAAAGTGCACTTGTTTTCCAAAGCTGTCACTTCTCAGGTGAACCTGGATTAGCATCGCTTTCGCCGAAAATATCTTTCCTAGGAAGACCATGGAAAGCATATGCCAAAGTTGTGATCATGGATTCAGTCATAGATGACATCTTTCTCCCTGAAGGCTACGAAGCATGGGCGGGAAATGCATTTACCCAGACAGCTACTTTTTTGGAGTATAACAATAAAGGTCCTGGTGCTGACACCAAAGCAAGAGTGAAATGGCCTAATGTTAAAGCTTTAACTGCTGGTGAGGCTGCTGCTTTTTACCCTGGTAAATTTCTTCAAATTTCTGGTACACCTTGGATGACTAGTTCTGGGGTACCTTGTTCCCTTGGTCCTATGAGTGGTGGTTCCGCTGCTGAAGCCACGCCTTCTATTCCTTCTGCAGCGTCTGCGCCTACTACGACTGCTACGTCCTAA 1788 0.429 MEKTHDHVNGGRNQKKRLAFLGISSILVVAVIGTVAVGLTRSGGSVEQNVKIFTTQRDAELLCRSDPDKCKTRLGRAFSRAGSVRDRIKGVFGEGRGALMRNINNPDLSKELVKDNMTGQAMRICNEVLGNAVDKFNKSDTVFDRSEFNRLSDFVFDLQVWITATLSDQATCLDAFEKADTKASERMAQVLSTSMKLSNNAIDMLNSASGLIRDFGHGPSNVNRRLLSHESEKLVDGYPTWVSEGQRRLLADPGVKPDAVVAQDGSGQFKTVAEALKTVPPNNAKPFVIYVKAGVYKEVVIIPLKMDYVTIIGDGPTKTKFTGSLNFVDGVLTYDSATVGVNGANFVAKDIGIENTAGPTKQQAVALRVSGDMAVFYNCQIDAYQDTLFAQSLRQYYRDCSISGTIDFIFGDPFGVFQNCKLIVRKPALGQACLVTADGRESASTQSALVFQSCHFSGEPGLASLSPKISFLGRPWKAYAKVVIMDSVIDDIFLPEGYEAWAGNAFTQTATFLEYNNKGPGADTKARVKWPNVKALTAGEAAAFYPGKFLQISGTPWMTSSGVPCSLGPMSGGSAAEATPSIPSAASAPTTTATS* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3550 595 CDD PMEI-like_3 61 210 - -
Psa1g3550 595 Gene3D - 255 570 IPR012334 -
Psa1g3550 595 ProSitePatterns Pectinesterase signature 1. 283 302 IPR018040 -
Psa1g3550 595 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Psa1g3550 595 PANTHER PECTINESTERASE 10 572 - -
Psa1g3550 595 PANTHER PECTINESTERASE 10 572 - -
Psa1g3550 595 Pfam Pectinesterase 258 551 IPR000070 GO:0030599|GO:0042545
Psa1g3550 595 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 206 IPR035513 -
Psa1g3550 595 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 208 IPR035513 -
Psa1g3550 595 Pfam Plant invertase/pectin methylesterase inhibitor 110 203 IPR006501 GO:0004857
Psa1g3550 595 MobiDBLite consensus disorder prediction 577 595 - -
Psa1g3550 595 SUPERFAMILY Pectin lyase-like 255 566 IPR011050 -
Psa1g3550 595 MobiDBLite consensus disorder prediction 574 595 - -
Psa1g3550 595 SMART PMEI_2 54 204 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3550 Psa-Chr1 305556258 305558827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3550 11 564 Carbohydrate Esterase AT5G49180 42.632 3.46e-153 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3550 K01051 - gmx:100784682 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3550 1 305556258 305558827 Psa1g3550 1 305556258 305558827 ECH
Psa4g0598 4 37065408 37067778 Psa1g3550 1 305556258 305558827 PCT