Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3548 ATGGAAAAAAACGATGAAAACTCCAATATTCCCAACAACTTCGATTCCAAGAGTTACAACCTCAGTGGCAAGATCATGCTCTGCGCCATAGTCCTTCTCTTCTTCGTCATAGTTCTAATGCTTTGTCTCCATATCTACGCCCGCTGGTACCTTCTCCAATCTCGCCGCCGACGCAACCGTCTCCGCCGTCGCAGTCAGCTTGTTTTCTTCACCGACAATCCAACAACCAGCGTCTCCGTCACTACAACTCACGGCCTCGACGCCTCTGTAATCGCTAAACTACCGTTATTCTTATACGATCCGAAGACTCACCCGGAAAACGCCACGGAGTGTGCCGTGTGTTTGTCGGAGTTTGAATCCGGAGAAACGGGTCGGGTTTTACCCAAATGTAACCATAGTTTTCACACCGAATGTATTGACATGTGGTTTCACTCTCATTCCACGTGTCCACTTTGTCGTGCATCGGTTGAGTCCACATTCGAACCACAACCCGAGGTTGTTATAACGGTTTATGAACCGGAAACCGGTTCGAGTTCGAGTCACGGTTCGGTTTTGGAAGATGAGAATTCGAACCGAACCGGTAAAGAGACTTGTTCGAGTTCGGTTGGGTTAAGAAGAAAGCCGTCTTTTACGGGAGTGGCCGTTGAGGTGCCTACGAGAAACAACGAAGGTTTTCGAGACGAGTCCTGTGACTCGCCGTCGTCGTTTCGGTCGCCGATGAGTCGGATGTTGTCGTTTAAGAGGATTCTTAGTAGGGAATGGAAAGGCAGCGTGTCTCCGTCGTCGTGCGGGGGTGGTGGTGGTTGTAGCTCGGTGGCTGAGTTGAACTTGAAGGTGGAACAAGGTGGACGAGGTGAGGTGAGACTCAGTGAGTTGAGTTGA 882 0.5023 MEKNDENSNIPNNFDSKSYNLSGKIMLCAIVLLFFVIVLMLCLHIYARWYLLQSRRRRNRLRRRSQLVFFTDNPTTSVSVTTTHGLDASVIAKLPLFLYDPKTHPENATECAVCLSEFESGETGRVLPKCNHSFHTECIDMWFHSHSTCPLCRASVESTFEPQPEVVITVYEPETGSSSSHGSVLEDENSNRTGKETCSSSVGLRRKPSFTGVAVEVPTRNNEGFRDESCDSPSSFRSPMSRMLSFKRILSREWKGSVSPSSCGGGGGCSSVAELNLKVEQGGRGEVRLSELS* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3548 293 SUPERFAMILY RING/U-box 90 165 - -
Psa1g3548 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 15 208 - -
Psa1g3548 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 161 IPR013083 -
Psa1g3548 293 CDD RING-H2_EL5_like 110 153 - -
Psa1g3548 293 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Psa1g3548 293 MobiDBLite consensus disorder prediction 174 198 - -
Psa1g3548 293 PANTHER RING-H2 FINGER PROTEIN ATL64 15 208 - -
Psa1g3548 293 SMART ring_2 111 152 IPR001841 -
Psa1g3548 293 Pfam Ring finger domain 110 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3548 Psa-Chr1 305454415 305456399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3548 1 260 Rapid Response to Elicitors AT3G16720 50.709 1.44e-70 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3548 - - lja:Lj6g3v1468220.1 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3548 1 305454415 305456399 Psa1g3548 1 305454415 305456399 ECH
Psa4g0599 4 37090111 37091542 Psa1g3548 1 305454415 305456399 PCT