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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Psa1g3548
ATGGAAAAAAACGATGAAAACTCCAATATTCCCAACAACTTCGATTCCAAGAGTTACAACCTCAGTGGCAAGATCATGCTCTGCGCCATAGTCCTTCTCTTCTTCGTCATAGTTCTAATGCTTTGTCTCCATATCTACGCCCGCTGGTACCTTCTCCAATCTCGCCGCCGACGCAACCGTCTCCGCCGTCGCAGTCAGCTTGTTTTCTTCACCGACAATCCAACAACCAGCGTCTCCGTCACTACAACTCACGGCCTCGACGCCTCTGTAATCGCTAAACTACCGTTATTCTTATACGATCCGAAGACTCACCCGGAAAACGCCACGGAGTGTGCCGTGTGTTTGTCGGAGTTTGAATCCGGAGAAACGGGTCGGGTTTTACCCAAATGTAACCATAGTTTTCACACCGAATGTATTGACATGTGGTTTCACTCTCATTCCACGTGTCCACTTTGTCGTGCATCGGTTGAGTCCACATTCGAACCACAACCCGAGGTTGTTATAACGGTTTATGAACCGGAAACCGGTTCGAGTTCGAGTCACGGTTCGGTTTTGGAAGATGAGAATTCGAACCGAACCGGTAAAGAGACTTGTTCGAGTTCGGTTGGGTTAAGAAGAAAGCCGTCTTTTACGGGAGTGGCCGTTGAGGTGCCTACGAGAAACAACGAAGGTTTTCGAGACGAGTCCTGTGACTCGCCGTCGTCGTTTCGGTCGCCGATGAGTCGGATGTTGTCGTTTAAGAGGATTCTTAGTAGGGAATGGAAAGGCAGCGTGTCTCCGTCGTCGTGCGGGGGTGGTGGTGGTTGTAGCTCGGTGGCTGAGTTGAACTTGAAGGTGGAACAAGGTGGACGAGGTGAGGTGAGACTCAGTGAGTTGAGTTGA
882
0.5023
MEKNDENSNIPNNFDSKSYNLSGKIMLCAIVLLFFVIVLMLCLHIYARWYLLQSRRRRNRLRRRSQLVFFTDNPTTSVSVTTTHGLDASVIAKLPLFLYDPKTHPENATECAVCLSEFESGETGRVLPKCNHSFHTECIDMWFHSHSTCPLCRASVESTFEPQPEVVITVYEPETGSSSSHGSVLEDENSNRTGKETCSSSVGLRRKPSFTGVAVEVPTRNNEGFRDESCDSPSSFRSPMSRMLSFKRILSREWKGSVSPSSCGGGGGCSSVAELNLKVEQGGRGEVRLSELS*
294
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Psa1g3548
293
SUPERFAMILY
RING/U-box
90
165
-
-
Psa1g3548
293
PANTHER
E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE
15
208
-
-
Psa1g3548
293
Gene3D
Zinc/RING finger domain, C3HC4 (zinc finger)
86
161
IPR013083
-
Psa1g3548
293
CDD
RING-H2_EL5_like
110
153
-
-
Psa1g3548
293
ProSiteProfiles
Zinc finger RING-type profile.
111
153
IPR001841
-
Psa1g3548
293
MobiDBLite
consensus disorder prediction
174
198
-
-
Psa1g3548
293
PANTHER
RING-H2 FINGER PROTEIN ATL64
15
208
-
-
Psa1g3548
293
SMART
ring_2
111
152
IPR001841
-
Psa1g3548
293
Pfam
Ring finger domain
110
153
IPR001841
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Psa1g3548
Psa-Chr1
305454415
305456399
Dispersed/Wgd
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Psa1g3548
1
260
Rapid Response to Elicitors
AT3G16720
50.709
1.44e-70
218
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Psa1g3548
-
-
lja:Lj6g3v1468220.1
296.975
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Event-related genes
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Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Psa1g3548
1
305454415
305456399
Psa1g3548
1
305454415
305456399
ECH
Psa4g0599
4
37090111
37091542
Psa1g3548
1
305454415
305456399
PCT
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