Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3516 ATGCCGCCACAGGGTAATGCCGCAGCAGCCGCGGCTCTTTATGATCAAGCTGCCGGCGGCTCCGTGCAAAGTTCATCCACTGATGCCGGAGACGCCGTTATGGCGCGGTGGCTTCAGTCAGCCGGCTTGCAGCATCTTGGCTCTCCATTTGCCTCATCCGGCATCGATCATCGCCTCCTCCCTAACCTTCTAATGCAGGGCTATGGAGCACAGTCTGCTGAAGAGAAGCAGAGGCTTTTGAAGTTAATGAGAAACCTCAATTTTAATGGGGAATCTGGTTCGGAGCTGTCTACGGCCAACATTCAAACTTTGGGTGGAGTGGCAGCATCAGATGGGTTTTATTCACCTGAGTTCAGAGGGGATTTTGGAGCTGGGCTTTTGGATCTTCATGCCATGGATGACATAGGGCTTTTGTCTGAGCATATGATTTCAGAACCTTTCGAACCATCACCCATCATACCCGGAGATACTAGAGCATTTGAAGATGATTTCTATCCAACTAACAGCAAGCTTGAAAAAGAAGCAGATGTTGACGCATCAATTTACTTACCTATGAATGAAAAAGAGAATAGCACAAGGGAGAATAACGTCGCCAAAATTAAAGTCGTGGTACGTAAAAGACCTTTAAACAAGAAAGAGCTTGCTAAGAAGGAGGATGATGCTGTAACGGTAGCTGACAATGCGTATTTGACAGTCTATGAACCAAAACTAAAGGTTGATCTAACAGCTTATGTAGACAAGCATGAGTTTTGTTTTGATGCCGTTCTTGATGAGCATGTTACTAACGATGAAGTATACCGAGCTACAGTTGAACCAATTATTCCTACAATTTTTGAACGAACCAAAGCTACCTGTTTTGCTTATGGTCAGACAGGAAGTGGCAAAACATACACAATGCAACCATTACCGCTCAGAGCTGCAGAAGACCTTGTTCGTCAGTTGCATCAGCCAGTTTACCGGAGTCAGAAATATAAATTGTGGCTTAGCTACTTTGAGATATATGGTGGAAAGCTATTTGATCTTCTTAGTGACAGAAGAAAACTTTGCATGAGGGAAGATGGACGGCAACAAGTTTGTATTGTAGGATTGCAAGAATTTGAAGTTTTTGACGTTCAAATTGTGAAAGAGTTCATTGAAAAGGGAAATGCTTCAAGAAGTACAGGATCCACGGGTGCTAATGAGGAGTCCTCCAGGTCGCATGCTATCTTACAATTGGTTGTAAAGAAGCACAATGAGGTGAAAGAGGGCAAGCGAAACACTGATGGAAATGAGGCAAAAAGTGGGAAGGTTGTGGGGAAGATATCTTTTATTGATCTTGCTGGAAGTGAAAGAGGTGCTGACACTACTGATAATGACCGTCAAACACGGATAGAAGGAGCCGAAATCAACAAGAGCCTTTTAGCTTTAAAGGAATGCATCCGTGCTCTAGACAATGACCAGATCCATATTCCATTCCGGGGAAGCAAACTTACAGAAGTGCTTCGGGACTCTTTTGTAGGCAACTCAAAAACTGTTATGATCTCTTGTATATCTCCAGGTGCTGGGTCTTGTGAACACACGCTTAACACCCTGAGATATGCTGATCGGGTTAAAAGTCTTTCCAAAAGTGGAAATCCTAGAAAAGACCCGATCCCCAATTGTGTACCACAACCACAACCTAATAAGGACGTTTCATCTACATCAACCCTTCCAGTTAGTGATCGTGCAGAGGATTTTAGTAACCAACGCCTAGAGAAACCATTGGATTTGGGCAGGAAACCATTTGAAATGGAGAATACTATGTATAGCTCTGCTGCTATTGCTGACAAACAGATACCTAGTATTTCTTCAAATCACCTATCAAATGGACGAGAAGAAAAAGGCATTACTTCTAGTATTTCTTCAAATTACCTATCAAATGGGCAAGAAGAAAAAGGTGCTTCTGCTTCAATGGAGGAGAGGTTTGAAAAAAAGAACTCTTATAATGATTCTTCCAGTCAAAAGACGCACTCTTACTCACAAAATGATTCAGATGAGAACGTGCAAAAGGTGTCTTCCCCACGTAGAAAAGGTTCTAAAGATGAAAGGTCCGAAAGGCCTACAAACTTGATGAAAAGGGATATCAATGGATCCGATCCCTCTACTACATGCTCCAAGCAGCAGATCACAGGGAATCACAATACTGTTACCACTAGATCTAGGCTTTATGAAGCAGAATCCGCTTCTGATGCAAATATCAATGCAGTACTTGAGGAGGAAGAAGCACTAATTGCTTCTCATAGGAAAGAAATTGAGGACACAATGGAGATTGTACGTGAAGAAATGAAACTCTTGGCAGAAGTGGACCAACCAGGAAGCCGTATTGACAACTATGTAGCCCAATTGAGTTTTGTGCTTTCTCGCAAAGCAGCTAGTCTTGTGGGCCTCCAAGCTCGCCTTGCAAGATTCCAACATCGACTAAAAGAACAGGAGATTCTAAGTAGAAAAAGTGTCTCCCGTCAGTAA 2484 0.4295 MPPQGNAAAAAALYDQAAGGSVQSSSTDAGDAVMARWLQSAGLQHLGSPFASSGIDHRLLPNLLMQGYGAQSAEEKQRLLKLMRNLNFNGESGSELSTANIQTLGGVAASDGFYSPEFRGDFGAGLLDLHAMDDIGLLSEHMISEPFEPSPIIPGDTRAFEDDFYPTNSKLEKEADVDASIYLPMNEKENSTRENNVAKIKVVVRKRPLNKKELAKKEDDAVTVADNAYLTVYEPKLKVDLTAYVDKHEFCFDAVLDEHVTNDEVYRATVEPIIPTIFERTKATCFAYGQTGSGKTYTMQPLPLRAAEDLVRQLHQPVYRSQKYKLWLSYFEIYGGKLFDLLSDRRKLCMREDGRQQVCIVGLQEFEVFDVQIVKEFIEKGNASRSTGSTGANEESSRSHAILQLVVKKHNEVKEGKRNTDGNEAKSGKVVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPGAGSCEHTLNTLRYADRVKSLSKSGNPRKDPIPNCVPQPQPNKDVSSTSTLPVSDRAEDFSNQRLEKPLDLGRKPFEMENTMYSSAAIADKQIPSISSNHLSNGREEKGITSSISSNYLSNGQEEKGASASMEERFEKKNSYNDSSSQKTHSYSQNDSDENVQKVSSPRRKGSKDERSERPTNLMKRDINGSDPSTTCSKQQITGNHNTVTTRSRLYEAESASDANINAVLEEEEALIASHRKEIEDTMEIVREEMKLLAEVDQPGSRIDNYVAQLSFVLSRKAASLVGLQARLARFQHRLKEQEILSRKSVSRQ* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3516 827 MobiDBLite consensus disorder prediction 533 585 - -
Psa1g3516 827 MobiDBLite consensus disorder prediction 657 674 - -
Psa1g3516 827 Coils Coil 743 774 - -
Psa1g3516 827 PANTHER KINESIN-RELATED PROTEIN 6 687 825 - -
Psa1g3516 827 PANTHER KINESIN-RELATED PROTEIN 6 624 689 - -
Psa1g3516 827 PANTHER KINESIN-RELATED PROTEIN 6 3 625 - -
Psa1g3516 827 MobiDBLite consensus disorder prediction 551 569 - -
Psa1g3516 827 Pfam Kinesin motor domain 205 532 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Psa1g3516 827 CDD KISc_KIF2_like 199 531 - -
Psa1g3516 827 PRINTS Kinesin heavy chain signature 280 301 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Psa1g3516 827 PRINTS Kinesin heavy chain signature 390 407 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Psa1g3516 827 PRINTS Kinesin heavy chain signature 433 451 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Psa1g3516 827 PRINTS Kinesin heavy chain signature 483 504 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Psa1g3516 827 MobiDBLite consensus disorder prediction 675 698 - -
Psa1g3516 827 PANTHER KINESIN-LIKE PROTEIN 624 689 - -
Psa1g3516 827 PANTHER KINESIN-LIKE PROTEIN 687 825 - -
Psa1g3516 827 PANTHER KINESIN-LIKE PROTEIN 3 625 - -
Psa1g3516 827 MobiDBLite consensus disorder prediction 640 656 - -
Psa1g3516 827 Coils Coil 799 819 - -
Psa1g3516 827 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 533 IPR027417 -
Psa1g3516 827 SMART kinesin_4 197 539 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Psa1g3516 827 ProSiteProfiles Kinesin motor domain profile. 199 533 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Psa1g3516 827 MobiDBLite consensus disorder prediction 626 709 - -
Psa1g3516 827 ProSitePatterns Kinesin motor domain signature. 432 443 IPR019821 GO:0003777|GO:0005524|GO:0007018
Psa1g3516 827 MobiDBLite consensus disorder prediction 571 585 - -
Psa1g3516 827 Gene3D Kinesin motor domain 177 536 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3516 Psa-Chr1 303436300 303444709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3516 191 533 Calmodulin-binding Proteins AT5G65930 33.239 2.11e-40 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3516 K10393 - gmx:100819897 1228.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3516 1 303436300 303444709 Psa1g3516 1 303436300 303444709 ECH