Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3514 ATGTTGAAGTTCAATACGTGGCCCAACACAACCCCAACCCTAACCCTATTCAATCTCAACTGCTTACCTTCCCCACAACCATCACCATCCTCTCTACATTTCGATTCAATCTCATTCCAAGCCTCCTACCTCATCAACAATTTCGATTTCTCCCCACAATTAGCTTCCAAACTTTCCTCCACCTACCGTCTTGCTTTCAAAACCACCCAAAATCCTGACTCTGTTCTCAACTTCTTCACAGATTACGGTTTCTCTAATTCCCAGTTACACCACATCATTGCCAAGGCACCATGGCTGCTTTCCTGCAACCTCTCCAAAAGGGTCTTGCCAAAGTTTCTATTTTTTCTCTCCAAAGGTGCTTCTATCTCTGACATTGTTAACCTTGTCAGCAGGAACCCTATAGTCTTGAGTCCAAGCTTGGAGAATCATATAGCCCCAACTTATGAATTGCTTTATAGAATCTTGCAATCAGACAAGGAAGTTATTGCTTCTGCAATTCGCACTCCAAATTTACTCTGTGACCATCTTGTACCACGTAACATTACAATGCTGATTCAGAATGGAGTCTCTGACTCAAATATTGCCAGAATTCTTCGAAACTGGAATGGGAGTCGGACATTGCAGATGTCTGAGATGATGACTTTATTGGAGGAATTAAAAGATTTGGGGTTTAATCCTTCAAAAACAATTTTTGGTGCAGCATTGATTGCCAAAACATCAGTACCCAAAACCAGGTGGAACAAGAAAGTTGATACTTATAAGAAATGGGGTTGGTCTGATCAAGATGTCATTGAAGCATTTAAAAAACAACCTTTTTGTATGTTAAAATCCGTTGACAAGATTGATTTAGTCATGAATTTCTGGGTAAATCAATTGGGCTGGGATGCTATGGCCCTTGCCAAACAACCCACGCTTTTTTGCTTAAGTTTGGAAAAAAGGATCATTCCAAGGGCCTCGGTTGTGCAATTTCTTTTGATGAATGGTTTGAGAAATAAGAGTGCAAGCTTAACTTCTCCATTTGTACCGCCTGAGAAGGTGTTTCTTGATAGGTTTATAAAACGTTTTGAGAAGAAGTCGTCTTATCTATTAAACTTGTACGAGGAGAAACTCAAGCTTGCATACACCGAGGACAAAAATTGCATCTCATGA 1149 0.4021 MLKFNTWPNTTPTLTLFNLNCLPSPQPSPSSLHFDSISFQASYLINNFDFSPQLASKLSSTYRLAFKTTQNPDSVLNFFTDYGFSNSQLHHIIAKAPWLLSCNLSKRVLPKFLFFLSKGASISDIVNLVSRNPIVLSPSLENHIAPTYELLYRILQSDKEVIASAIRTPNLLCDHLVPRNITMLIQNGVSDSNIARILRNWNGSRTLQMSEMMTLLEELKDLGFNPSKTIFGAALIAKTSVPKTRWNKKVDTYKKWGWSDQDVIEAFKKQPFCMLKSVDKIDLVMNFWVNQLGWDAMALAKQPTLFCLSLEKRIIPRASVVQFLLMNGLRNKSASLTSPFVPPEKVFLDRFIKRFEKKSSYLLNLYEEKLKLAYTEDKNCIS* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3514 382 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 29 374 - -
Psa1g3514 382 Pfam mTERF 243 346 IPR003690 GO:0003690|GO:0006355
Psa1g3514 382 Pfam mTERF 76 225 IPR003690 GO:0003690|GO:0006355
Psa1g3514 382 PANTHER CGI-12 PROTEIN-RELATED 29 374 IPR003690 GO:0003690|GO:0006355
Psa1g3514 382 Gene3D Transcription termination factor 3, mitochondrial 139 359 IPR038538 -
Psa1g3514 382 SMART mt_12 296 330 IPR003690 GO:0003690|GO:0006355
Psa1g3514 382 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Psa1g3514 382 SMART mt_12 264 295 IPR003690 GO:0003690|GO:0006355
Psa1g3514 382 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3514 Psa-Chr1 303260069 303262544 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g3514 mTERF 9.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3514 K15032 - gmx:102663414 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3514 1 303260069 303262544 Psa1g3514 1 303260069 303262544 ECH