Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3512 ATGTTGAAGTTCAATACATGGCCCAACACAACCTCAACCCTGACCCTATTCAATCTCAAGTGCTTACCTTCCCTACAAACATCACCATCCTCTGTACATTTCGATTCAACCTCATTCCAAGTCTCCTACCTCATCAACAATTTCGATTTCTCCCCACAATTAGCTTCCAAACTTTGCTCCACCCACCGTCTTGCTTTCAAAACCACCCGAAATCCTGACTCTGTTCTCAACTTCTTCACAGATTACGGTTTCTCTAATTCCCAGTTACGCCACATCATTGCCAAGTCACCATGGCTCCTTTCCTGCAACCTCTCCAAAAGGGTCTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGTGCTTCTATCTCTGACATTGTTAACCTTGTCAGCAGGAACCCTAGAGTCTTGAGTCCAAGCTTGGAGAATTATATAGCCCCAACCTATGAATTGCTTTATAGAATCTTGCAATCAGACAAGGACATTATTGCTTCTGCAATTCAGACTCCAAATTTACTCGGTCACAGTCCTCTGCGCCGTAACATTACAATGCTGATTCAGAATGGAGTGTCTGACTCAAATATTGCCATAATTCTTCGAAGCTGGACTGGGAGTCGGGCATTGCAGATGTCTGGCATAGCCAGTTTATTGGAGGAATTAAAGGATTTGGGGTTTGATCCTTCAAAACATGTTTTTGCTGTAGCATTGATTGCCAAAACATCAGTAACCAAAACCAGGTGGAAGGAGAAAGTTGATGCCTTTAAGAACTGGGGTTGGTCTGATGAAGATGTCATTGTAGCATTTAAAAGGCAACCTTATTGTAGGTTAACATCTATTGAGAAAATTAATTTAGTGATGAGTTTCTGGGTAAATCAATTGGGCTGGGATGCTCTGGCCCTTGTCAAACAACCCGGGGTTCTTGGCTATAGTTTGGAAAAAAGGATCATTCCAAGGGCCTCGGTTGTGCAATTTCTTTTGATGAATGGTTTGAGAAATAAGAACGCAAGCTTAACTTCTCCATTTGTAGTGCCTGAGAAGGTGTTTCTTGATAGGTTTATAAAACGTTTTGAGAACGAGTCTTCTTATCTATTAAACTTGTACGAGGAGAAACTCAAGCTTGCATACACCGAGGACAAAAATTGCATCTCATGA 1149 0.4151 MLKFNTWPNTTSTLTLFNLKCLPSLQTSPSSVHFDSTSFQVSYLINNFDFSPQLASKLCSTHRLAFKTTRNPDSVLNFFTDYGFSNSQLRHIIAKSPWLLSCNLSKRVLPKFQFFLSKGASISDIVNLVSRNPRVLSPSLENYIAPTYELLYRILQSDKDIIASAIQTPNLLGHSPLRRNITMLIQNGVSDSNIAIILRSWTGSRALQMSGIASLLEELKDLGFDPSKHVFAVALIAKTSVTKTRWKEKVDAFKNWGWSDEDVIVAFKRQPYCRLTSIEKINLVMSFWVNQLGWDALALVKQPGVLGYSLEKRIIPRASVVQFLLMNGLRNKNASLTSPFVVPEKVFLDRFIKRFENESSYLLNLYEEKLKLAYTEDKNCIS* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3512 382 Pfam mTERF 76 224 IPR003690 GO:0003690|GO:0006355
Psa1g3512 382 Pfam mTERF 240 347 IPR003690 GO:0003690|GO:0006355
Psa1g3512 382 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 22 374 - -
Psa1g3512 382 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
Psa1g3512 382 SMART mt_12 296 330 IPR003690 GO:0003690|GO:0006355
Psa1g3512 382 SMART mt_12 264 295 IPR003690 GO:0003690|GO:0006355
Psa1g3512 382 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Psa1g3512 382 Gene3D Transcription termination factor 3, mitochondrial 139 359 IPR038538 -
Psa1g3512 382 PANTHER CGI-12 PROTEIN-RELATED 22 374 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3512 Psa-Chr1 303217753 303219714 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g3512 mTERF 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3512 K15032 - gmx:102663414 343.969