Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3511 ATGATGGGAACACTATCTTGCTTCTGCATGTTTTTGCCACACGACAAATCTAGGAACACTCCAATGTTGAAAATCAAAACCCTAAATCCAATCCCAAATTTCAATTCTTCTCTCTCTTTGAAATGCTACTCTTCAACAACTTCCCAACAAAACCAATTCACTATTTCATATCTCGTTGCCAATTTCGGCTTCTCATTAGAAACCGCTACAGAGGTTTCCAAACGCGTTCATTTCAAGACTTCCGAAAAGCCTGATTCAGTAATCCTCATCTTCAGAAACTTCGGTTTCTCCGATTCTCAGATTAACCACATCGTTAGTAAAGCGCCCAACATTCTTACATGTAACCCCCACAAAAGGATTTTGCCAAAGTTTGAATTTTTACTCTCAAAAGGTGCTTCAATTTCTGATGTAGTGGAGATTGTGGGAAGAAGCCCTAGAATTCTATATTCAAGTCTTGACAATTGCACAATCCCTACTTTTCAATTGGTAAGAAAGTTCTTTGCATCTAATGAGGAAGTTATTCAACTCATACTTAAATGTAGATGTTTCTTTGGTCATTATAATGTTATGAATAATGTCAAGTTGTTGCTTGATGATGGAGTCACTGACTCAAATATGAGATATTTGTTACTTAACAGAACCGTTATATTTTCTTCTTATGACATGAGGAGTGCTTTGGATATGGTTAAGAAAATGGGATTTAATGATCCTTCCAAAGTTAATTTTAGTTTAGCATTGTATGCCATAACGGCCACGACGAAATCCCTCTGGAATGCCAAAGTTATTGTCTTTAAGAGATGGGGTTGGTCTGATGAAATGGTTCTTGAAGCATTTAGGAAGCGACCCTTGTTTATGCTATCATCCACAGAGAAAATTGATAAGGTCATGAGATTTTGGGTGAATGAGTTGGGTTGGAACTCCTTGACTCTTGTCAAAAGGCCGTATATTGTAACATTTAGTTTGGAGAAAAGGATCATTCCGAGGGCCAGTGTTGTTTTATATCTGATCTCCAAAGGTTTGATAGAAAAGAATGTTGAACTCTGTACCCCTTTCGTTGTTAATGAAAAGGCGTTTCTTCAAAAGTATGTGCAAAGTTTTAAAGGGGAAAGACATAATTTGTTAAAGCTATACCAGGAGAAAATGGATGGTAAGACAATCAAGGAAAATGGTGAAGCGTCTGGAAGCTATTGA 1191 0.3703 MMGTLSCFCMFLPHDKSRNTPMLKIKTLNPIPNFNSSLSLKCYSSTTSQQNQFTISYLVANFGFSLETATEVSKRVHFKTSEKPDSVILIFRNFGFSDSQINHIVSKAPNILTCNPHKRILPKFEFLLSKGASISDVVEIVGRSPRILYSSLDNCTIPTFQLVRKFFASNEEVIQLILKCRCFFGHYNVMNNVKLLLDDGVTDSNMRYLLLNRTVIFSSYDMRSALDMVKKMGFNDPSKVNFSLALYAITATTKSLWNAKVIVFKRWGWSDEMVLEAFRKRPLFMLSSTEKIDKVMRFWVNELGWNSLTLVKRPYIVTFSLEKRIIPRASVVLYLISKGLIEKNVELCTPFVVNEKAFLQKYVQSFKGERHNLLKLYQEKMDGKTIKENGEASGSY* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3511 396 PANTHER CGI-12 PROTEIN-RELATED 22 383 IPR003690 GO:0003690|GO:0006355
Psa1g3511 396 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Psa1g3511 396 SMART mt_12 307 341 IPR003690 GO:0003690|GO:0006355
Psa1g3511 396 SMART mt_12 102 133 IPR003690 GO:0003690|GO:0006355
Psa1g3511 396 SMART mt_12 138 169 IPR003690 GO:0003690|GO:0006355
Psa1g3511 396 Pfam mTERF 288 358 IPR003690 GO:0003690|GO:0006355
Psa1g3511 396 Pfam mTERF 91 297 IPR003690 GO:0003690|GO:0006355
Psa1g3511 396 Gene3D Transcription termination factor 3, mitochondrial 186 375 IPR038538 -
Psa1g3511 396 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 22 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3511 Psa-Chr1 303171705 303174114 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g3511 mTERF 3.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3511 K15032 - gmx:102666622 383.259