Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3507 ATGTCTTCTTCTTCTTGGCTAACTTCACCTTCATGCACCCTTTGGCCTATAGATTCATCTTCCTCTACACCAAACCTCATGCTTCAATGGTTAACCTTTCTTTTTCTATCTCCATGTCCTCAAAGACTTGTTCTTTCTGCTATTGATTCATTGTTTTTGCTCTCTCTCTTAGCCTTTGCTGCTCACAAGCTTTACTCAAGATTCAACTCATCTTCCAACTCTACCTCCTCAATCACAAAACCACTTCTGCAGGAGAAAGATTCTGACTATAGAATCACTTTTTGGTTCAAATTATCTTTCTTGGTAACTATCCTTTTGGCTGTAACTTATACTGTTCTAGGAGTCTTGGCTTTTATGCAAACCAACTTTGCTTCATGGAAACTAATTGAAGCACTTTTTCGGTTGTTTCAAGCAATAACCAACATAGTGATAGTGATTTTAATGATACATGAGAGAAAGTTCAAATTTTCCAAACACCCTTTATCATTAAGAATCTATTGGATAGCAAACTTTGTGGTTGCTACTTTGTTTGCTGCTTCAGCTATTGTTCGAATAGTAACTGTTGGTGAAGCAAATTTGGAACTTAGTTTGAGAATAGATGACATATTCTCATTGATTAATTTTCCATTATCTGTGTTCTTTTTTGTGATAACTATAAAAGGGTCATCAGGGATTCATGTGATAAGAATATCTGATGAAGGCGCAATATATCCATTGATTTCGAGGGATAGAACTTTGAGTCCTTATGCTTGTTCTTCAATTTTATCCAAATCAGTTTGGTTATGGATAAACCCTTTGCTTAATAAAGGTTACAAAACACCCCTTAACCTAGAAGATGTTCCTTCACTCCCTCTTGAATTTAGAGCAGAAAAAATGTCTGAACTTTTTCAAAACAATTGGCCTAAACCAGATGGAAATAGTAAGCATCCTGTTGGACTAACCCTTCTCAGGTGTTTTTGGAAACACTTAGCTTTCACTGCTTTCCTTTCAATCGTTAAGCTTTGTCTTATATATGTCGGTCCATTGTTGATTCAGAGTTTTATTGATTTCACATCAAGGAAAGATAGTACTCTCGGTGAAGGTATTGTTTTGATATCGATCCTTTTTGCAGCGAAATCGGTTGAAGTACTTTGTGCCCATCAGTACAACTTCCACTCTCAGAAACTTGGCATGCTTATTCGCTCAAGCATAATCACTTCAGTTTACAAAAAGGGTTTAAGGTTGTCGAGTTCTTCAAGACAAACTCATGGAACGGGACAGATTGTGAATCACATGGCTGTAGATGCTCAACAACTCTCAGATATGATGATGCAGATTCATCCTATATGGTTGATGCCATTGCAAGTTACTGCTGCACTGACTCTTATATATAGATATATTGGTGTATCTGCTCTTGCTGCATTTCTTGGAACTGCCGTAGTTTATCTTTTCTCGACATATCGATTTAAGAGTTGTAATGGTTTCCAGTCTCAGATAATGACGAGCCGCGATTTGAGACTGAAGGCGACGAATGAGTTGCTTAACAATATGCGCGTGATTAAGTTTCAAGCGTGGGAAGAGTATTTCGATAACAAAATTCGACAGTTTCGTGAAGCCGAGCATGGATGGATTGGGAAATTCTTGTACAATTTTGCTGTTAACTATGGAGTATTGTGTGCTACGCCATTAATTGTATCTTTTCTTACCTTTGGAACTGCAACTTTAATCGGAATTCCTTTGAACCCTGGCACTGTTTTCACAATAACTTCGATTATCAAGATACTTCAAGAGCCTTTGAGGACTTTTTCTCAGGCTCTTGTTTGTGTTTCTCAAGCAACAATATCTTTAGGGAGGTTGGATGAGTTCTTGACAAGCAAGGAAATGGATGAGAATGCAGTGCAAAAAGAGGAGAATTGTGACGATGATGTAGCTGTGGAGATAAAAGATGGGAAATTCTCGTGGGATGATAATGATGAGAAAGATGCTTTGAGAGTTGAAGAGTTGGTAATTAAGAAAGGGAATCATGCTGCTGTTGTAGGAACTGTTGGTTCAGGCAAGTCTTCATTATTGGCTTCTTTGTTGGGAGAAATGTTCAAGATCTCAGGAAAGGTTAGAGTTTGTGGAACAACAGCGTATGTAGCACAAACATCATGGATTCAGAATGCAACCATCAAAGAAAACATATTGTTTGGCTTACCAATCAACATCGACAAATACAAGGAAACTTTAAGAGTGTGCTGTCTTGAGAAGGATCTTGAAATGATGGAATATGGTGATGAAACCGAGATTGGAGAGCGCGGAATTAACCTCAGCGGTGGTCAGAAACAACGCATACAACTTGCTAGAGCTGTATATCAGGACACTGACATCTATCTCCTTGACGATGTATTCAGTGCTGTTGATGCTCAAACAGGATCTTATATTTTTAAGGAATGTATCATGGGAACTCTCAAAGATAAGACTGTTTTACTTGTAACCCACCAAGTTGATTTCTTGCATAATGTTGACTCTATAATGGTGATGCGTGAAGGAAGAGTAGTGCAAAGTGGAAAGTATGATGAACTTCTCAAAGCTGGCCTAGATTTTGGTGCACTTGTGGCAGCTCATGAATCCTCTATGGAAATGGCAGAAACAGGTGACAAAACTAGTGATGATTCACCTCAATCTCCAAAACTTGCCCGCATTGCATCGAAAGAAAAAGAAAGCGGAGGTGAAAAACAGTCTTCTCAAGATCAATCTAAGTCCGGTGATAAGACTGCAGCAAAGCTCATTGAAGACGAGGGAAGAGAAACTGGAAATGTGAGCCTTAAAGTATACAAACAATATTTCACAGAAGCGTATGGATGGTGGGGAATAGCACTTGTAGTAGCAATGTCAGCGGGTTGGGTGTTGTCATTTTTGGCTGGTGACTATTGGCTAGCAATTGCTACAGCAGATGGTTCTGGCATTCCTTCATTTACTTTCATTTCTGTCTACACTGTTATAGTTGTTATTGCATGCATAGTTGTTATAGTAAGAGCTTTCGTGTATACATATTTGGGTTTAAAGACATCTCAAAGCTTTTTCATTGGAATGCTTCAAAGTATCCTTCATGCACCAATGTCATTCTTTGATACCACTCCTTCTGGCAGAATTTTGAGTCGTGTATCTACTGATCTACTTTCGGTTGATATAACAATCCCAATGTTAGCAAACTTTGTAATGATAACATACTTATCATTACTCAGTATCATCATTGTCACATGCCAGAATTCTTGGGTGACTGTCTTTCTCTTAATTCCACTGGTTTGGCTCTACAACTGGTATAGGAAATACTATCTTGCAACTTCTAGGGAATTGACTCGTCTTGATTCAATCACAAAAGCTCCGGTGATTCATCACTTTTCGGAGACCCTTTCTGGTGTTATGACAATCCGTAGCTTAAGAAAGCAAAATGAATTTTGTGATGAAAATATTGAGAGGGTGAATGCAAGTCTAAGAATGGATTTCCATAACAATGGTGCAAATGAATGGCTTGGTTTTCGCTTGGACTACATGGCAGTGATTTTCCTTTGTATTGCCACCTTTTGTATGATCTTTTTGCCAAGTGCTATTGTAAAGCCAGAATATGTTGGTATGTCTCTATCCTATGGCCTGTCTCTGAGTGGACTTTTGTCATTTTCCATAACTATGAGTTGCAATATTGAGAACAAAATGGTTTCAGTTGAGAGGATAAAGCAGTTTACTAACCTCTCATCAGAAGCTCCATGGAAAATAGCTGATAAGTCTCCGCCTCAGAATTGGCCTAGTCATGGAACTATAGAGTTAAATAATTTACAGGTATATATTGCCAATACTCCTCTAGTTCTTAAAGGATTCTCTCTAACCATTGAAGGCGAGAAAAAGTTGGCGTTGTGGGGTACAGGAAGTGGAAAATCAACACTGATCCAAGTTTTATTTAGTGTTGGCCTTCATGAATTTGAGTCGCGTTTTGGAATTATTCCACAAGATCCTGTCCTCTTTCAAGGAACAGTTAGAAGCAACATTGATCCTCTTGGATTGTATTCAGAAGATGAAATTTGGAAGAGTCTTGAGCGGTGTCAATTGAAAGAAGTGGTGGCTGCAAAGCCCGAGAAACTCGAGGCTTTAGTGGTTGATGGTGGAGACAATTGGAGTGTTGGACAAAGGCAGCTTCTATGTTTGGGAAGGATAATGCTAAAACGCAGCAGAATATTATTCATGGATGAAGCAACTGCATCGGTTGATTCACAAACCGATGTTGTAATACAAAAGATCATCAGAGAGGATTTTGCAGATCGTACGATCATTAGCATTGCTCACAGAATACCAACAGTTATGGATTGTGACAAGGTTTTGGTCATAGACGCAGGTTTGGCAAAGGAATATGAGAAACCATCACGTTTGCTTGAAAGGGCTTCACTTTTTGCAGCATTGGTTAAAGAGTATTCCAATAGATCAACTTAG 4443 0.3862 MSSSSWLTSPSCTLWPIDSSSSTPNLMLQWLTFLFLSPCPQRLVLSAIDSLFLLSLLAFAAHKLYSRFNSSSNSTSSITKPLLQEKDSDYRITFWFKLSFLVTILLAVTYTVLGVLAFMQTNFASWKLIEALFRLFQAITNIVIVILMIHERKFKFSKHPLSLRIYWIANFVVATLFAASAIVRIVTVGEANLELSLRIDDIFSLINFPLSVFFFVITIKGSSGIHVIRISDEGAIYPLISRDRTLSPYACSSILSKSVWLWINPLLNKGYKTPLNLEDVPSLPLEFRAEKMSELFQNNWPKPDGNSKHPVGLTLLRCFWKHLAFTAFLSIVKLCLIYVGPLLIQSFIDFTSRKDSTLGEGIVLISILFAAKSVEVLCAHQYNFHSQKLGMLIRSSIITSVYKKGLRLSSSSRQTHGTGQIVNHMAVDAQQLSDMMMQIHPIWLMPLQVTAALTLIYRYIGVSALAAFLGTAVVYLFSTYRFKSCNGFQSQIMTSRDLRLKATNELLNNMRVIKFQAWEEYFDNKIRQFREAEHGWIGKFLYNFAVNYGVLCATPLIVSFLTFGTATLIGIPLNPGTVFTITSIIKILQEPLRTFSQALVCVSQATISLGRLDEFLTSKEMDENAVQKEENCDDDVAVEIKDGKFSWDDNDEKDALRVEELVIKKGNHAAVVGTVGSGKSSLLASLLGEMFKISGKVRVCGTTAYVAQTSWIQNATIKENILFGLPINIDKYKETLRVCCLEKDLEMMEYGDETEIGERGINLSGGQKQRIQLARAVYQDTDIYLLDDVFSAVDAQTGSYIFKECIMGTLKDKTVLLVTHQVDFLHNVDSIMVMREGRVVQSGKYDELLKAGLDFGALVAAHESSMEMAETGDKTSDDSPQSPKLARIASKEKESGGEKQSSQDQSKSGDKTAAKLIEDEGRETGNVSLKVYKQYFTEAYGWWGIALVVAMSAGWVLSFLAGDYWLAIATADGSGIPSFTFISVYTVIVVIACIVVIVRAFVYTYLGLKTSQSFFIGMLQSILHAPMSFFDTTPSGRILSRVSTDLLSVDITIPMLANFVMITYLSLLSIIIVTCQNSWVTVFLLIPLVWLYNWYRKYYLATSRELTRLDSITKAPVIHHFSETLSGVMTIRSLRKQNEFCDENIERVNASLRMDFHNNGANEWLGFRLDYMAVIFLCIATFCMIFLPSAIVKPEYVGMSLSYGLSLSGLLSFSITMSCNIENKMVSVERIKQFTNLSSEAPWKIADKSPPQNWPSHGTIELNNLQVYIANTPLVLKGFSLTIEGEKKLALWGTGSGKSTLIQVLFSVGLHEFESRFGIIPQDPVLFQGTVRSNIDPLGLYSEDEIWKSLERCQLKEVVAAKPEKLEALVVDGGDNWSVGQRQLLCLGRIMLKRSRILFMDEATASVDSQTDVVIQKIIREDFADRTIISIAHRIPTVMDCDKVLVIDAGLAKEYEKPSRLLERASLFAALVKEYSNRST* 1481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3507 1480 CDD ABCC_MRP_domain1 638 838 - -
Psa1g3507 1480 CDD ABC_6TM_ABCC_D1 325 612 IPR044746 GO:0140359
Psa1g3507 1480 Coils Coil 1131 1151 - -
Psa1g3507 1480 CDD ABC_6TM_ABCC_D2 941 1235 IPR044726 GO:0140359
Psa1g3507 1480 Gene3D - 1243 1474 IPR027417 -
Psa1g3507 1480 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 324 599 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g3507 1480 MobiDBLite consensus disorder prediction 866 913 - -
Psa1g3507 1480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1260 1474 IPR003439 GO:0005524
Psa1g3507 1480 SUPERFAMILY ABC transporter transmembrane region 314 620 IPR036640 GO:0005524|GO:0016021
Psa1g3507 1480 SMART AAA_5 665 846 IPR003593 -
Psa1g3507 1480 SMART AAA_5 1284 1451 IPR003593 -
Psa1g3507 1480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 638 861 IPR003439 GO:0005524
Psa1g3507 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 857 IPR027417 -
Psa1g3507 1480 ProSitePatterns ABC transporters family signature. 763 777 IPR017871 GO:0005524
Psa1g3507 1480 CDD ABCC_MRP_domain2 1258 1458 - -
Psa1g3507 1480 Pfam ABC transporter 1276 1405 IPR003439 GO:0005524
Psa1g3507 1480 Pfam ABC transporter 661 789 IPR003439 GO:0005524
Psa1g3507 1480 SUPERFAMILY ABC transporter transmembrane region 942 1238 IPR036640 GO:0005524|GO:0016021
Psa1g3507 1480 Gene3D - 632 864 IPR027417 -
Psa1g3507 1480 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 60 1480 - -
Psa1g3507 1480 Gene3D ABC transporter type 1, transmembrane domain 310 621 IPR036640 GO:0005524|GO:0016021
Psa1g3507 1480 Gene3D ABC transporter type 1, transmembrane domain 908 1241 IPR036640 GO:0005524|GO:0016021
Psa1g3507 1480 Pfam ABC transporter transmembrane region 325 592 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g3507 1480 Pfam ABC transporter transmembrane region 945 1187 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g3507 1480 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 60 1480 - -
Psa1g3507 1480 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 942 1223 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g3507 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1250 1473 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3507 Psa-Chr1 303046109 303051608 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3507 638 884 Calmodulin-binding Proteins AT2G36910 30.189 1.18e-25 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3507 - K05665 gmx:100780167 2235.3