Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3505 ATGTCTTTTTCTTCTTCTTCTTCTTCATGGCTAACTTCACCTTCATGCACCCTTTTACCTATAGATTCATCTTCCTCTACACCAAACCTCGTGCTTCAGTGGTTAACCTTTCTTTTTCTATCTCCATGTCCTCAAAGACTTCTTCTTTCTGCTCTTGATTCGTTGTTTTTGCTCTTTCTCTTAGCTTTTGCAGCTCACAAGCTTTACTCAAGATTCAACTCAACTACCAACTCTACCTCCTCAATCACAAAATCACTTCTGCAGGAGAAAGATTCTGACTATAGGATCACCTTTTGGTTCAAACTACCTTTGTTGGTAACTATCCTTTTGGCTATAGCTTATACTGTTCTAGGAGTCTTGGCTTTTACGCAAACTAACTTTGCTTCATGGAGACTAATAGAAGCACTTTTTCGGTTGTTTCAAGCAATAGTCAACATAGTGATAGTGATTTTAATGATACATGAGAAAAAATTCAAATTTTCCAAACACCCTTTATCATTAAGAATCTATTGGATAGCAAACTTTGTGATTGCTACTTTGTTTGCTGTTTCAGCTATTGTTCGAGTAGTAACTGTTGGTGAAGCAAACCTGGAACTTAGTTTGAGAATAGATGATATATTCTCATTGATTAATCTTCCATTATCTGTGTTATTTTTTGTGATAGCTATAAAAGGGTCATCAGGGATTCATGTGATAAGAATATCTGATGCAGTAGTAGCGACATATAGGTCGATTTCAACCGATAGAGCTTTGAGTCCTTATGCTTGTTCGTCATTTTTGTCCAAAACAGTGTGGTATTGGATGAACCCTTTGATTAATAAAGGTTACGAAACACCTCTTAAACTTGAAGATGTACCTTCACTTCCTCTTGAATTTAGAGCAGAAAAAATGTCAGAGCTTTTTCAAAATAATTGGCCAAAACCAGAGGAAAACAGTAAGCATCCAGTTGGAGTAACCTTATTTAGGTGTTTTTGGAAACCCTTAACTTTCACTGGCTTCCTTGCAATCATTAGGCTTTGTGTTATGTATGTTGGTCCAATGCTGATTCAGAGCTTTGTTGATTTCACATCAAGAAAAGATAGTACTACTAATGAAGGCGTTGTTTTGATATTGATCCTTTTTGTGGCAAAATCAGTTGAAGTACTTAGTGTTCATCAATTCAACTTCCACTCTCAGAAACTTGGTATGCTTATTCGTTCGAGCATAATCACTTCGGTTTACAAAAAGGGTTTAAGGTTGTCAAGTTCTTCAAGACAAGCTCATGGAACTGGCCAGATTGTGAACCACATGGCTGTTGATGCTCAACAGCTCTCAGATTTGATGATGCAGTTTCATCCTATTTGGATGATGCCATTACAAGTTGCAGCTGCGCTAATTCTTATGTATAGCTATGTTGGTATATCAGTACTTGCAGCATTGCTTGGAACCACCGTTGTGTTTCTCTTCACGCTATATCGGACGAAGAGTAGTAACAGCTTCCAGTTTCGGATAATGACGAGCCGCGACTCGAGGATGAAGGCTACAAACGAGTTGCTTAACAACATGCGAGTGATAAAGTTTCAAGCGTGGGAAGATTATTTTGGTAACAAAGTTCGACAGTTTCGTGAAGCTGAGCATGGATGGATTGGGAAATTCTTGTACTATTTCGCTGTTAACATGGGAGTTTTGTCCACTGCTCCACTAGCTGTAACTGTTCTTACCTTCGGAACCGCAACTTTTATTGGAGTTCCTTTGAATGCTGGCACTGTTTTCACCATAACTTCGGTAATTAAGATACTTCAGGAGCCTGTGAGAACTTTTCCTCAGGCTCTTATCATGATTTCGCAAGCAACAATCTCTTTAGGAAGGTTGGATGAGTTTATGGTGAGTAAAGAAATGGATGAGAATGCAGTTCAAAGAGAGGAGAATTGTGATGGTGATGTAGCTGTGGAGATAAAAGATGGGAAATTCTCATGGGATGATAAGGATGAGAATGAGACTTTGAAAGTTGATGAGTTGGTGATAAAGAAAGGGAATCATGCTGCTGTTGTAGGAACTGTTGGATCAGGCAAGTCTTCATTATTGGCTTCTGTGTTGGGAGAAATGTTCAAGATCTCAGGAAAGGTTAGAGTTTGTGGGACGACAGCGTATGTAGCACAAACATCATGGATTCAGAATGCAACCATCAAAGAAAACATATTATTTGGTTTACCAATGAACACGAACAAGTACCGGGAAGCTTTAAGAGTGTGCTGTCTTGAGAAGGATCTTGAAATGATGGATGATGGTGATGAGACCGAAATTGGAGAGCGTGGAATTAACCTCAGCGGCGGTCAGAAACAACGCATACAGCTTGCTAGAGCTGTATATCAGGACACTGACATCTACCTCCTTGATGATGTATTCAGTGCTGTTGATGCTCAAACTGGATCTTTTATTTTTAAGGAATGTATCATGGGAAGTCTCAAAGATAAGACTGTTTTACTTGTGACCCACCAAGTTGATTTCTTGCATAATGTTGACTCTATAATGGTGATGCGTGAAGGAAGAGTAGTGCAAAGTGGAAAGTATGATGAACTTCTCAAAGCTGGCCTAGATTTTGGTGCACTTGTGGCAGCTCATGAATCCTCTATGGAGATAACAGAAACAGGTGATAATTCCAATGATGATTCTTCTTCTCAGTCTCCAAAACTCGCCCGCATCGCTTCAAAAGAAAAAGAAAATGCGGGCGAACAACAGTCTTCTCAAGATAAACCTAAGCCTGATAAGACAGCTGCAAAGCTCATTGAAGATGAAGAAAGAGAAACAGGACGTGTAAACCTTGAAGTATACAAACATTATTTCACAGAAGCATTTGGATGGTGGGGAATAGCACTCATGGTAGCAATGTCAGTGGCTTGGATGTTGGCATTTTTGGCCGGTGATTATTGGCTAGCATTTGCAACTTCAGATGATTCTAGCATTCCTTCTTTCACTTTCATTATTGTCTATGCTGTTATAGCTGTTGTTGCATGCATAGTGGTTATGGTAAGAGCTTTCTTGTTTACATATTGGGGTCTAAAGACATCTCAAAGCTTCTTCATTGGAATGCTTCAAAGTATCCTTCATGCACCAATGTCATTCTTTGATACCACTCCTTCTGGCAGAATTTTGAGTCGAGTATCTACTGATCTACTTTGGGTGGATATTTCAATTCCAATGTTGCTAAACTTTGTAGTACTAGCATATTTATCATTATTCAGTATCCTCATTGTCACATGCCAGAACTCTTGGGAGACTGTCTTCCTCTTAATTCCACTGTTTTGGTTCAACAACTGGTATAGGAAGTATTATCTTGCAACATCTAGGGAATTGACTCGTCTTGATTCAATCACAAAAGCTCCGGTGATTCATCACTTTTCAGAGACCCTTTCTGGTGTTATGACAATCCGTAGCTTAAGAAAGCAGAATGAATTTTCTGATGAAAATATTGAGAGGGTGAATGCAAGTGTAAGAATGGATTTCTATAACAATGGTGCAAATGAATGGCTTGGTTTTCGCTTGGACTATATGGGAGTGGTTTTCCTTTGCATGGCCACTCTTTTTATGATCTTTTTGCCAAGTGCTATTGTTAAGCCAGAATATGTTGGTATGTCTTTATCCTATAGCTTGGCTCTGAGCGGTCTCCTGTCATTTACCATAACGATGACTTGCTCGGTTGAGAACAAAATGGTTTCAGTTGAGAGGATAAAGCAGTTTACTAACCTCCCATCAGAAGCTCCATGGAAAATAGCTGACAAGTCTCCGCCTCAGAATTGGCCTAGTCATGGAACTATAGAGTTAAATAATTTACAGGTTAGGTACAGGCCAAATACTCCTCTAGTTCTTAAGGAGTTGATTGAGCCTTCCGCTGGGAATATAATGATTGATGGTCGCGGTTTTGGAATTATTCCACAAGATCCTGTCCTCTTTCAAGGAACAGTTAGAAGCAACATTGATCCTCTTGGATTGTATTCAGAAGATGAAATTTGGAAGAGTCTTGAGCGGTGTCAATTGAAAGAAGTGGTGGCTGCAAAGCCCGAGAAACTCGAGGCTTTAGTGGTTGATGGTGGAGACAATTGGAGTGTTGGACAAAGGCAGCTTCTATGTTTGGGAAGGATAATGCTAAAACGCAGCAAAATATTATTCATGGATGAAGCAACTGCATCGGTTGATTCACAGACCGATGTTGTAATACAAAAGATCATCAGAGAGGATTTTGCAGATCGTACGATCATTAGCATTGCTCACAGAATACCAACAGTTATGGATTGTGACAAGGTTTTGGTCATAGATGCAGGTTTGGCAAAGGAATATGAGAAACCATCACGTTTGCTTGAAAGAGCATCATTTTTGGCAGCATTGGTTAAAGAGTATTCTAATAGATCACTTAGTTATTTTTCATTATTATGA 4410 0.3923 MSFSSSSSSWLTSPSCTLLPIDSSSSTPNLVLQWLTFLFLSPCPQRLLLSALDSLFLLFLLAFAAHKLYSRFNSTTNSTSSITKSLLQEKDSDYRITFWFKLPLLVTILLAIAYTVLGVLAFTQTNFASWRLIEALFRLFQAIVNIVIVILMIHEKKFKFSKHPLSLRIYWIANFVIATLFAVSAIVRVVTVGEANLELSLRIDDIFSLINLPLSVLFFVIAIKGSSGIHVIRISDAVVATYRSISTDRALSPYACSSFLSKTVWYWMNPLINKGYETPLKLEDVPSLPLEFRAEKMSELFQNNWPKPEENSKHPVGVTLFRCFWKPLTFTGFLAIIRLCVMYVGPMLIQSFVDFTSRKDSTTNEGVVLILILFVAKSVEVLSVHQFNFHSQKLGMLIRSSIITSVYKKGLRLSSSSRQAHGTGQIVNHMAVDAQQLSDLMMQFHPIWMMPLQVAAALILMYSYVGISVLAALLGTTVVFLFTLYRTKSSNSFQFRIMTSRDSRMKATNELLNNMRVIKFQAWEDYFGNKVRQFREAEHGWIGKFLYYFAVNMGVLSTAPLAVTVLTFGTATFIGVPLNAGTVFTITSVIKILQEPVRTFPQALIMISQATISLGRLDEFMVSKEMDENAVQREENCDGDVAVEIKDGKFSWDDKDENETLKVDELVIKKGNHAAVVGTVGSGKSSLLASVLGEMFKISGKVRVCGTTAYVAQTSWIQNATIKENILFGLPMNTNKYREALRVCCLEKDLEMMDDGDETEIGERGINLSGGQKQRIQLARAVYQDTDIYLLDDVFSAVDAQTGSFIFKECIMGSLKDKTVLLVTHQVDFLHNVDSIMVMREGRVVQSGKYDELLKAGLDFGALVAAHESSMEITETGDNSNDDSSSQSPKLARIASKEKENAGEQQSSQDKPKPDKTAAKLIEDEERETGRVNLEVYKHYFTEAFGWWGIALMVAMSVAWMLAFLAGDYWLAFATSDDSSIPSFTFIIVYAVIAVVACIVVMVRAFLFTYWGLKTSQSFFIGMLQSILHAPMSFFDTTPSGRILSRVSTDLLWVDISIPMLLNFVVLAYLSLFSILIVTCQNSWETVFLLIPLFWFNNWYRKYYLATSRELTRLDSITKAPVIHHFSETLSGVMTIRSLRKQNEFSDENIERVNASVRMDFYNNGANEWLGFRLDYMGVVFLCMATLFMIFLPSAIVKPEYVGMSLSYSLALSGLLSFTITMTCSVENKMVSVERIKQFTNLPSEAPWKIADKSPPQNWPSHGTIELNNLQVRYRPNTPLVLKELIEPSAGNIMIDGRGFGIIPQDPVLFQGTVRSNIDPLGLYSEDEIWKSLERCQLKEVVAAKPEKLEALVVDGGDNWSVGQRQLLCLGRIMLKRSKILFMDEATASVDSQTDVVIQKIIREDFADRTIISIAHRIPTVMDCDKVLVIDAGLAKEYEKPSRLLERASFLAALVKEYSNRSLSYFSLL* 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3505 1469 Gene3D - 1262 1465 IPR027417 -
Psa1g3505 1469 CDD ABC_6TM_ABCC_D2 946 1240 IPR044726 GO:0140359
Psa1g3505 1469 Pfam ABC transporter 1261 1388 IPR003439 GO:0005524
Psa1g3505 1469 Pfam ABC transporter 665 794 IPR003439 GO:0005524
Psa1g3505 1469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 330 609 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g3505 1469 Gene3D ABC transporter type 1, transmembrane domain 914 1246 IPR036640 GO:0005524|GO:0016021
Psa1g3505 1469 Gene3D ABC transporter type 1, transmembrane domain 318 626 IPR036640 GO:0005524|GO:0016021
Psa1g3505 1469 MobiDBLite consensus disorder prediction 871 917 - -
Psa1g3505 1469 CDD ABCC_MRP_domain2 1263 1441 - -
Psa1g3505 1469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 947 1228 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g3505 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 862 IPR027417 -
Psa1g3505 1469 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1285 1462 - -
Psa1g3505 1469 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 63 1284 - -
Psa1g3505 1469 CDD ABC_6TM_ABCC_D1 330 617 IPR044746 GO:0140359
Psa1g3505 1469 MobiDBLite consensus disorder prediction 872 892 - -
Psa1g3505 1469 Coils Coil 1136 1156 - -
Psa1g3505 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1255 1455 IPR027417 -
Psa1g3505 1469 SUPERFAMILY ABC transporter transmembrane region 947 1245 IPR036640 GO:0005524|GO:0016021
Psa1g3505 1469 SMART AAA_5 670 851 IPR003593 -
Psa1g3505 1469 MobiDBLite consensus disorder prediction 893 917 - -
Psa1g3505 1469 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 63 1284 - -
Psa1g3505 1469 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 1285 1462 - -
Psa1g3505 1469 CDD ABCC_MRP_domain1 643 843 - -
Psa1g3505 1469 Gene3D - 638 869 IPR027417 -
Psa1g3505 1469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1237 1457 IPR003439 GO:0005524
Psa1g3505 1469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 643 866 IPR003439 GO:0005524
Psa1g3505 1469 SUPERFAMILY ABC transporter transmembrane region 320 621 IPR036640 GO:0005524|GO:0016021
Psa1g3505 1469 Pfam ABC transporter transmembrane region 969 1193 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g3505 1469 Pfam ABC transporter transmembrane region 329 597 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g3505 1469 ProSitePatterns ABC transporters family signature. 768 782 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3505 Psa-Chr1 302904204 302909879 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3505 643 893 Calmodulin-binding Proteins AT2G36910 31.365 1.23e-27 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3505 - K05665 gmx:100804807 2321.97