Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3497 ATGCAGAACGAAGAAGGACAAATCACCGAGCTCTACATTCCTAGGAAGTGTTCTGCTACAAACAGATTGATTACTGCTAAGGATCATGCTTCCGTTCAGATTAACGTAGGTCATTTGGATGAGAGTGGTGTCTACAATGGTCACTTCTCTACCTTCGCTCTATGCGGCTTCACTCGCGCTCAGGGAGATGCTGACAGTGGAATTGACCGCTTGTGGGCGAAAAAGAAAACTGAACTTAAGCAATAG 246 0.4553 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINVGHLDESGVYNGHFSTFALCGFTRAQGDADSGIDRLWAKKKTELKQ* 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3497 81 PIRSF RPS21e 1 81 IPR001931 GO:0003735|GO:0005840|GO:0006412
Psa1g3497 81 Gene3D - 1 80 IPR038579 -
Psa1g3497 81 PANTHER 40S RIBOSOMAL PROTEIN S21 1 81 - -
Psa1g3497 81 Pfam Ribosomal protein S21e 1 76 IPR001931 GO:0003735|GO:0005840|GO:0006412
Psa1g3497 81 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Psa1g3497 81 PANTHER 40S RIBOSOMAL PROTEIN S21 1 81 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3497 Psa-Chr1 302476649 302477987 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3497 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 81.481 5.98e-50 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3497 K02971 - gmx:100817753 155.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3497 1 302476649 302477987 Psa1g3497 1 302476649 302477987 ECH