Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3484 ATGGATCCTGTAAGAGGTGTGGGTAGTGTTGTGGGGACTGTGATGATTCCCATGCGGTTTGTGTGGCCATATGGTGGAAGGAGTGTTTTTCTCAGTGGTTCTTTCACAAGATGGTCTGAACTTTTGCCAATGTCTCCGGTGGAAGGTTGCCCGACAGTGTTTCAAGTTATTTATAGATTGCCCCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGGGAATGGCGGCATGATGAGCATCAACCATATGTACACGGACAATATGGGATAGTCAACACTGTCTTATTGGCAACTGATCCTAACTACATACCTGTTATAAATTTAGACATTGCTCCCGGAAGTAACATGGATGTGGATAATGAGAATTTTCGCCGTGTGGTTCAGGTAACAGAAGCTACATTGAGTGAGGTGCTTCCAAGAATATCAGATACTGATGTACAGATCTCTCGTCAGCGTATTTCTGCATTTCTGTCTATGCACACAGCTTACGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCGTTGGATGTTGATTTACCAGTGAAACAAGCATTCCATATACTGCATGAGCAGGGAATATACATGGCTCCTCTGTGGGACATGTGCAAGGGGCAGTTTGTTGGTGTTCTTAGTGCTTTGGATTTCGTCTTAATTTTAAGGGAGTTAGGGAATCGTGGGTCTAATCTGACAGAAGAGGAACTCGAAACACATACCATATCGGCTTGGAAAGAAGGCAAGTCATATCTAAACAGACAGAACAATGGACAGGGAACTGCATTTTCTAGACATCTTGTTAACGCAGGGCCATATGATAATCTGAAAGACATTGCCATGAAGATCTTGCAAAAGGAGGTTTCAACAGTTCCTATTATCCATTCATCTCTTGAAGATGGTTCTTTTCCACAGTTACTACATCTTGCTTCACTGTCAGGAATACTCAAATGCATTTGTAGGTATTTTAGGCATTGCTCTAGTTCATTGCCTATACTACAACTTCCAATATGTGCAATACCTGTGGGCACATGGGTGCCCAAAATCGGAGAATCAAACCGGCGGCCTCTAGCAGTGTTGAGACCAAGCTCTTCTCTTGCTTCAGCCCTGAATTTATTAGTTCAAGCACAAGCAAGTTCAATACCAATTGTTGATGATAATGACTCATTGCTGGATATATATTGTCGGAGTGATATAATGGCTTTGGCAAAGGACAGGGCATATACACATATCAATCTTGATGAAATGACTGTTCAACAGGCTTTACAGTTGGGCCAGGATGTGTGTAATCCCTACGAGCCTAGAAGTCAAAGATGTCAAATGTGTTTGCGTTCTGATTCACTCCATAAAGTGATTGAGCGTTTGGCAAATCCAGGTGTGAGGAGGATTGTTATTGTGGAAGCTGGCAGCAAGCGCTTAGAAGGCATCGTCTCATTGAGCGACATATTCAAGTTCTTTCTCACTTAA 1458 0.4266 MDPVRGVGSVVGTVMIPMRFVWPYGGRSVFLSGSFTRWSELLPMSPVEGCPTVFQVIYRLPPGYHQYKFFVDGEWRHDEHQPYVHGQYGIVNTVLLATDPNYIPVINLDIAPGSNMDVDNENFRRVVQVTEATLSEVLPRISDTDVQISRQRISAFLSMHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIYMAPLWDMCKGQFVGVLSALDFVLILRELGNRGSNLTEEELETHTISAWKEGKSYLNRQNNGQGTAFSRHLVNAGPYDNLKDIAMKILQKEVSTVPIIHSSLEDGSFPQLLHLASLSGILKCICRYFRHCSSSLPILQLPICAIPVGTWVPKIGESNRRPLAVLRPSSSLASALNLLVQAQASSIPIVDDNDSLLDIYCRSDIMALAKDRAYTHINLDEMTVQQALQLGQDVCNPYEPRSQRCQMCLRSDSLHKVIERLANPGVRRIVIVEAGSKRLEGIVSLSDIFKFFLT* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3484 485 SUPERFAMILY CBS-domain pair 349 484 IPR046342 -
Psa1g3484 485 Gene3D Immunoglobulins 16 108 IPR013783 -
Psa1g3484 485 SUPERFAMILY E set domains 16 97 IPR014756 -
Psa1g3484 485 Gene3D - 141 325 IPR046342 -
Psa1g3484 485 Gene3D - 341 485 IPR046342 -
Psa1g3484 485 ProSiteProfiles CBS domain profile. 432 485 IPR000644 -
Psa1g3484 485 ProSiteProfiles CBS domain profile. 165 227 IPR000644 -
Psa1g3484 485 SUPERFAMILY CBS-domain pair 152 322 IPR046342 -
Psa1g3484 485 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 10 484 - -
Psa1g3484 485 ProSiteProfiles CBS domain profile. 349 406 IPR000644 -
Psa1g3484 485 Pfam CBS domain 438 483 IPR000644 -
Psa1g3484 485 Pfam CBS domain 351 398 IPR000644 -
Psa1g3484 485 CDD E_set_AMPKbeta_like_N 17 95 - -
Psa1g3484 485 Pfam Glycogen recognition site of AMP-activated protein kinase 16 98 IPR032640 -
Psa1g3484 485 SMART cbs_1 171 220 IPR000644 -
Psa1g3484 485 SMART cbs_1 353 401 IPR000644 -
Psa1g3484 485 SMART cbs_1 435 484 IPR000644 -
Psa1g3484 485 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 10 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3484 Psa-Chr1 301902661 301913157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3484 8 106 Protein tyrosine phosphatase (PTP) family AT3G01510 31.373 2.30e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3484 - - gmx:100785692 842.032