Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3483 ATGTTCAACTTCAATAGAACCCTAATCTATCTCAAGGGATTAACACCACTATCCCCAAACCCTAATCCATCACTATTTTCTCTTCATTTCTGCACCAACACTTCCGATTCAACCTCATTTCCTGCCTCCTACCTCATCCACAATTTCGGTTTCTCCCCACAATTTGCTTCCAAACTTTGCTCCACCCACCGTCTTCGATTCAAGACTACCCAAAAACCTGACTCTGTTCTCAACTTCTTCACAAACCATGGTTTCTCACACTCCCACCTCTGCAATATGATTGCCAAGATACCTGGGCTACTTTCCTGCAACCCCTCCAAAAGGGTCTTGCCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTAACTCCGACATTGTTAACCTTGTCAGTAAGAACCCTAGAGTCTTGTCTGCTAGCCTCAAGAATCATATACTCCCAGCCTATGAATTGCTTTATAGATTCTTGCAATCAGACAGCGACATTATTGCTTCTGCAATTCAGAATCCAGATTTACTATGTGAGCATCTTGTGCCGCGTAACATTACAATGCTGATTGAGAATGGAGTCTCTGACTCAAATATTGCAAGGCTGCTTCGGATTCGGAGTCAGATATTCAAGGCACGTGACACCATGAAGTTTGTGGAGGAAGTGAAGAATTTGGGGTTTGATCCTTCGAAAATAATTTTCTCAGTCGCATTGATTGCCAAAACATCGGTAAGCAAAAACTTGTGGGAGGAAAAAGTTGACACCTTTAAGAAGTGGGGTTGGTCGGATGAAGATGCTTTTGAAGCATTTAGAAAGAAACCTTATTGTATGTTAACTTCTGTTGATAAAATAAATTTAGTGATGAGCTTTTGGGTAAATCAGTTGGGTTGGGATGCTATGGCCATTGCCAAAACACCATACATTTTGTCGTTGAGTTTGGAAAAAAGGATCATTCCGAGGGTCGCTGTTTTGCAATTTCTTCTCAGTAAAGGTTTGAAAAATAAGAATGCAAGCTTAACTTATCCATTTATAGTGTCTGAGAAGATGTTTCTGGATATGTTTATAAAACGTTTTAAGAACGAGTCTTCTTATCTATTAAAGTTGTACGAGGAAAAACTCAATCCTGCATACACTAGGGACAAGACATGCATGCCGTGA 1146 0.4023 MFNFNRTLIYLKGLTPLSPNPNPSLFSLHFCTNTSDSTSFPASYLIHNFGFSPQFASKLCSTHRLRFKTTQKPDSVLNFFTNHGFSHSHLCNMIAKIPGLLSCNPSKRVLPKFQFLLSKGASNSDIVNLVSKNPRVLSASLKNHILPAYELLYRFLQSDSDIIASAIQNPDLLCEHLVPRNITMLIENGVSDSNIARLLRIRSQIFKARDTMKFVEEVKNLGFDPSKIIFSVALIAKTSVSKNLWEEKVDTFKKWGWSDEDAFEAFRKKPYCMLTSVDKINLVMSFWVNQLGWDAMAIAKTPYILSLSLEKRIIPRVAVLQFLLSKGLKNKNASLTYPFIVSEKMFLDMFIKRFKNESSYLLKLYEEKLNPAYTRDKTCMP* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3483 381 Pfam mTERF 77 225 IPR003690 GO:0003690|GO:0006355
Psa1g3483 381 Pfam mTERF 240 346 IPR003690 GO:0003690|GO:0006355
Psa1g3483 381 Gene3D Transcription termination factor 3, mitochondrial 138 360 IPR038538 -
Psa1g3483 381 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 26 373 - -
Psa1g3483 381 PANTHER CGI-12 PROTEIN-RELATED 26 373 IPR003690 GO:0003690|GO:0006355
Psa1g3483 381 SMART mt_12 263 294 IPR003690 GO:0003690|GO:0006355
Psa1g3483 381 SMART mt_12 127 158 IPR003690 GO:0003690|GO:0006355
Psa1g3483 381 SMART mt_12 295 329 IPR003690 GO:0003690|GO:0006355
Psa1g3483 381 SMART mt_12 226 258 IPR003690 GO:0003690|GO:0006355
Psa1g3483 381 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3483 Psa-Chr1 301541222 301543339 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g3483 mTERF 4.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3483 K15032 - gmx:102663414 382.874