Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3482 ATGAGAAAGAAAAAGAAAACAAAACGCCAAGCCTCTGAGGCTAGCACACCGAAAAAAATAAGAAAAGAACCTGTTGTTACCATTGATAATGAGGACGAGGAAGAAGAAAGACATCAACTGACTCGAAATAAGGCAGAACGAGCAAAGCAGAATCCTCCCGATGAAAGCTCAGAGAGTGCAAATTCGAGTTCTAGTTTTAAGGAAAATGAGAAGAATATCCAGTTATTTTTTATGATGGTTACAAGTTCTGTTAATGTATTGCAATCTTGCTTCTGCATGTTTTTGACACACCACAAATCATTGAACTCTCCAATCTTGAAAACCAAAACCCTAAATCCAATCCCAAATTTCAATTCTTCTCTCTCTTTGAAATGCTACTCTTCAACAACTTCCCAACAAAACGAATTCACAGTTTCATATCTCGTTACCAATTTCGGCTTCTCATTAGAAACCGCTACAAAGGCTTCCAAACTCGTTCATTTCAAGGCTTCCCAAAACCCTGATTCAGTAATCGTCATCTTCAGAAACTTCGGTTTCTCCGATTCTCAGATAAACGACATCGTTAGTAAAGCGCCCAACATTCTTACATGTGACCCCCACAAAAGGATTTTGCCAAAGTTTGAATTTTTACTCTCAAAGGGTGCTTCAGATTCTGATATAGTGGAGATTGTGACCAGAAGCCCTAAAATTCTATATTCAAGCCTTGAGAATTGCATAATCCCCACTTTTGAATTGGTAAGAAGGTTCTTTCCATCTAATGAGAAAGTTATTAAAGTCTTACTCAAATGTAGTTTTTTCTTTGGTCATAATCGTGTTATTAAGAATGTGAAGTTGTTGCTTGATCATGGAGTCACTGACTCAAATATAAGATATTTGTTACTTAAAACACCGGCTATATTTTCGTGTCATGACTTAAAGAGTGCTCTGGATATGGTTAAGAAAATGGGATTTAATGATCCTTCCAAAGTTAATTTTTGTATAGCATTGTTAGCCAAAAGGGCTATGTCGAAATCTCGGTGGGATGCTAAAGTTATTGTCTTTAAGAGATGGGGTTGGTCTGATGAAATGGTTCTAGAAGCGTTTAGAAAGCGACCCTTGTGTATGCTAACATCCACAGAAAAAATTAATGATATCATGAGATTTTGGGTGAATGAGTTGGGTTGGAACTCTTCGGTTCTTGTCAAAAGGGCGGATATGTTTTCGTATAGTTTGGAGAATAGGATCATTCCGAGGGCTTGTGTTGTTTCATATCTAATCTCCAAAGGTTTGATAGAAAACAATCTTGAATTGTCTACCCCTTTTGTTGTTAGTGAAAAGGCGTTTATTGAAAAGTATGTGCAAAGTTTTAAAGGGGAAAGACATAATTTGTTAAAGCTATACCAGGAGAAAATGGATGGTAAGACAATCAAGGAAAATGGTGAAGCGTCTGGAAGCTATTGA 1440 0.3688 MRKKKKTKRQASEASTPKKIRKEPVVTIDNEDEEEERHQLTRNKAERAKQNPPDESSESANSSSSFKENEKNIQLFFMMVTSSVNVLQSCFCMFLTHHKSLNSPILKTKTLNPIPNFNSSLSLKCYSSTTSQQNEFTVSYLVTNFGFSLETATKASKLVHFKASQNPDSVIVIFRNFGFSDSQINDIVSKAPNILTCDPHKRILPKFEFLLSKGASDSDIVEIVTRSPKILYSSLENCIIPTFELVRRFFPSNEKVIKVLLKCSFFFGHNRVIKNVKLLLDHGVTDSNIRYLLLKTPAIFSCHDLKSALDMVKKMGFNDPSKVNFCIALLAKRAMSKSRWDAKVIVFKRWGWSDEMVLEAFRKRPLCMLTSTEKINDIMRFWVNELGWNSSVLVKRADMFSYSLENRIIPRACVVSYLISKGLIENNLELSTPFVVSEKAFIEKYVQSFKGERHNLLKLYQEKMDGKTIKENGEASGSY* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3482 479 Coils Coil 28 51 - -
Psa1g3482 479 MobiDBLite consensus disorder prediction 10 53 - -
Psa1g3482 479 SMART mt_12 221 251 IPR003690 GO:0003690|GO:0006355
Psa1g3482 479 SMART mt_12 390 424 IPR003690 GO:0003690|GO:0006355
Psa1g3482 479 SMART mt_12 185 216 IPR003690 GO:0003690|GO:0006355
Psa1g3482 479 SMART mt_12 358 389 IPR003690 GO:0003690|GO:0006355
Psa1g3482 479 SMART mt_12 290 318 IPR003690 GO:0003690|GO:0006355
Psa1g3482 479 SMART mt_12 257 285 IPR003690 GO:0003690|GO:0006355
Psa1g3482 479 Pfam mTERF 173 365 IPR003690 GO:0003690|GO:0006355
Psa1g3482 479 Pfam mTERF 270 441 IPR003690 GO:0003690|GO:0006355
Psa1g3482 479 PANTHER CGI-12 PROTEIN-RELATED 105 466 IPR003690 GO:0003690|GO:0006355
Psa1g3482 479 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 105 466 - -
Psa1g3482 479 MobiDBLite consensus disorder prediction 1 66 - -
Psa1g3482 479 Gene3D Transcription termination factor 3, mitochondrial 239 458 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3482 Psa-Chr1 301525346 301528818 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g3482 mTERF 6.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3482 K15032 - gmx:102666622 397.897